PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130521001 | ||||||||
Common Name | GSBRNA2T00130521001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 512aa MW: 57363.8 Da PI: 6.6188 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.6 | 3.7e-25 | 186 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt eLH++F+ av++ G ++A+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl GSBRNA2T00130521001 186 KPRVIWTRELHNKFLAAVDHV-GFKNAVPKKILDLMNVDNLTRENVASHLQKFRL 239 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 87.6 | 3.4e-29 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+++ +++l+++l + +y +v+++d+++ alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + GSBRNA2T00130521001 19 VLAVDDDHTCLRILETLLHRCQY-HVTTTDKAQTALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMNLPVIMLSAHSDPKYVMK 106 799********************.***************888888*******************87755.569***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 +k Ga d+l Kp+ +eel + GSBRNA2T00130521001 107 GVKHGACDYLLKPVRIEELKN 127 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.7E-36 | 16 | 138 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.0E-43 | 16 | 140 | No hit | No description |
SMART | SM00448 | 1.6E-33 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.629 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.1E-26 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.80E-29 | 20 | 132 | No hit | No description |
PROSITE profile | PS51294 | 14.035 | 183 | 242 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 183 | 244 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-19 | 185 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-23 | 186 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 191 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MTVEQGIEAV DQFPVGMRVL AVDDDHTCLR ILETLLHRCQ YHVTTTDKAQ TALELLRENK 60 NKFDLVISDV DMPDMDGFKL LELVGLEMNL PVIMLSAHSD PKYVMKGVKH GACDYLLKPV 120 RIEELKNIWQ HVVRKSKLKK MKGIVTNGES EGNSDQNGVR ANRKCKDQLE EKDEEEQEQE 180 RGNDKKPRVI WTRELHNKFL AAVDHVGFKN AVPKKILDLM NVDNLTRENV ASHLQKFRLA 240 LKKITNEAKQ QANMAAANSH FMQMSSLKGF GSFHHSPIPL GSSQFHGGAA TMRHYPSNRT 300 FAGMFPHVSS SLPRNLHNDG GHMLQGTPFP PLENLHINSN NKAFPSFASQ QSSLLVAPSM 360 VLEGHQQSTS PSFSPHLEIN KRLEDWSNNI PQSNVHSEPD ALGWNMFGNS TNQTYFCRDT 420 DFGSSSAAHA DSLQMKQQHE NIFSPMTVAQ LLRSSSANEG LFMGQQKLED GFMASDAGSL 480 DDIVNSMMTQ FFECSRNSQA EFSEGDWVWV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-28 | 185 | 245 | 4 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and leaves. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130521001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353533 | 0.0 | AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013621492.1 | 0.0 | PREDICTED: two-component response regulator ARR10-like isoform X1 | ||||
Swissprot | O49397 | 0.0 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | A0A0D3A2Q8 | 0.0 | A0A0D3A2Q8_BRAOL; Two-component response regulator | ||||
STRING | Bo1g010830.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 0.0 | response regulator 10 |