PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130472001
Common NameGSBRNA2T00130472001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 515aa    MW: 58374.1 Da    PI: 8.0664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130472001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.2e-1221881596
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                         +l+l  +f+++h ++      l + d sg+ Wevkl  ++++    l++GW+eF+  n+  +g ++vF+++g++ f  +v v
  GSBRNA2T00130472001 21 LLTLDDEFLRNHTKV------LLISDASGKIWEVKL--DGNR----LAGGWEEFAAVNNFSDGNVLVFRHNGDEIF--HVAV 88
                         688889999888755......88999**********..9999....***********************9998888..6655 PP
2B372.84.2e-23139236199
                          EEEE-..-HHHHTT-EE--HHH...HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkf..aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          f+ + ++ ++l ++rl l+++f  ++ ++++  ++ ++ l +e+gr+W+++l+ + +sg++++t+GW++F++angL  gDf+ Fkl++ s
  GSBRNA2T00130472001 139 FLRARVTRYNLIKDRLDLSRDFkfMSFNKHN--KPCEIYLANEKGRKWTLRLSRNISSGAFYITRGWSNFCSANGLIRGDFCYFKLSK-S 225
                          56667889999999*****988435555666..5558****************9*******************************987.8 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          ++++v+ ++++
  GSBRNA2T00130472001 226 GERPVLLLCSH 236
                          88899999987 PP
3B362.66.4e-20276368598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            +++ +k+g+l+++  f+ e g+   +s+++tl +++gr+W  +l++++ks++  ++++kGW+e++kang++++D+++++l+  ++ ++
  GSBRNA2T00130472001 276 KYTPSRFKTGQLYISPGFLLESGIR--KSREITLLNKDGRKWPSYLQMTGKSRSewFYMRKGWREMCKANGVEVNDSFMLELIC-EDVTP 362
                          568999*************999988..6779***************9955555556**************************99.77778 PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                           +k+++
  GSBRNA2T00130472001 363 IFKFHS 368
                          888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.209192IPR003340B3 DNA binding domain
SMARTSM010197.5E-101092IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-112888IPR015300DNA-binding pseudobarrel domain
CDDcd100179.20E-72888No hitNo description
Gene3DG3DSA:2.40.330.109.6E-113188IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-21139237IPR003340B3 DNA binding domain
PROSITE profilePS5086315.834139236IPR003340B3 DNA binding domain
PfamPF023622.8E-19140236IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-19143237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17144235IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-17149235No hitNo description
Gene3DG3DSA:2.40.330.103.9E-16269368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-17271370IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.8E-21272370IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998272369IPR003340B3 DNA binding domain
PfamPF023625.3E-20274369IPR003340B3 DNA binding domain
CDDcd100175.91E-13283368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MVIPPKPSLF HLKFLTGEKP LLTLDDEFLR NHTKVLLISD ASGKIWEVKL DGNRLAGGWE  60
EFAAVNNFSD GNVLVFRHNG DEIFHVAVSS DIQHASPSFT DTDDTEVDDE ADGEDEDTDD  120
DAWDVLVRKN KKPEADSCFL RARVTRYNLI KDRLDLSRDF KFMSFNKHNK PCEIYLANEK  180
GRKWTLRLSR NISSGAFYIT RGWSNFCSAN GLIRGDFCYF KLSKSGERPV LLLCSHESGN  240
GHEDKEEKRP EADPVKVCSV GGCTKEKNTP RILTLKYTPS RFKTGQLYIS PGFLLESGIR  300
KSREITLLNK DGRKWPSYLQ MTGKSRSEWF YMRKGWREMC KANGVEVNDS FMLELICEDV  360
TPIFKFHSKI ENKGACESVE KTQGVEIDGQ RGSKRGHTRV SNRSNTNSRK FQRTLPESCS  420
VSDLVANVKQ RIQDTLNTLR HFRAEIETKV KNLEAPLLQV DALGERILGI SKILNSNLQK  480
HYLSTHSMNF MKAAAFGSSS LGSRISIDME VEDD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130472001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620573.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2T70.0A0A0D3A2T7_BRAOL; Uncharacterized protein
STRINGBo1g011120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-166B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]