PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130471001
Common NameGSBRNA2T00130471001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 428aa    MW: 48599.6 Da    PI: 10.5982
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130471001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.5e-161462212299
                          H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          f++++g+ k +  ++ + ++sg+sW + l+++k+ g+ ++++GW++F++an+Lk+g f  F+l+  +++++++k+++k
  GSBRNA2T00130471001 146 FTKANGLHK-SWCEINVINQSGKSWVMGLRHNKGTGQDFMRGGWRSFCRANKLKTGSFYRFELVL-TRTRPTLKLCSK 221
                          556666665.4459*****************99999999***********************986.778899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-13120219IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-15122222IPR003340B3 DNA binding domain
PfamPF023629.2E-14144221IPR003340B3 DNA binding domain
CDDcd100174.77E-13146220No hitNo description
SuperFamilySSF1019361.8E-12150219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.293158222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPNHIHILWF LKITHIRLHD LITNGGSTTS PKSNAPFFVV SLASHNSNPI IPDAFFTTHL  60
DGNNELTKLK LTSDACDTTW QRGRGNDLPP LTITWDKVSY SRNYSPKKRS RLKTESSSIE  120
NSCILGVTSS NLRLNRVVST YNSTFFTKAN GLHKSWCEIN VINQSGKSWV MGLRHNKGTG  180
QDFMRGGWRS FCRANKLKTG SFYRFELVLT RTRPTLKLCS KAKVSAKPNR AGQRSSMNRC  240
RFMTVTLKAY MLKSRQLDGF KLCSIFETLL RGRTGSRKEE RLIWWTKMEE HGRLCVASGG  300
ITTGETFTLK FVREKRQNSD ASVLLQGQET KVNTETRFQK KASVSVEGEP SRRTHASHKS  360
TVDSQNLECK QPLETIYHQV RQSMLNVLAD VRRFGSELEI KEQNLEAVLE EIDLLGEKVS  420
EINKLFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130471001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-109AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620599.11e-173PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM3-like
SwissprotQ8VZQ97e-77REM3_ARATH; B3 domain-containing protein REM3
TrEMBLA0A3P6FUY70.0A0A3P6FUY7_BRAOL; Uncharacterized protein
STRINGBo1g011130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.13e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]