PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130468001
Common NameGSBRNA2T00130468001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 496aa    MW: 55410.8 Da    PI: 5.0313
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130468001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29e-1128912097
                         HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                          +f+++h ++      l + d s + Wevkl  ++++    l++GW+eF+  n+  eg ++vF+++g++ f  +v v 
  GSBRNA2T00130468001 28 DEFISSHTKV------LLISDASDKIWEVKL--DGNR----LAGGWEEFAAVNNFSEGNVLVFRHNGEEIF--HVAVS 91
                         5666666544......78889**********..9999....***********************9998888..77665 PP
2B375.17.9e-24140237199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+ + +++++l+++rl l+k+f      ++++++++ l +e+gr+W+++l+ + +sg++++t+GW +F++angL  gDf+ Fkl++ s++
  GSBRNA2T00130468001 140 FLRARVTPYSLTKDRLDLSKDFKFMLFDEHKKPFEIYLVNEKGRKWTLRLSRNISSGAFYITRGWANFCSANGLIRGDFCYFKLSE-SGE 228
                          6677899***************644455667999*****************9*******************************976.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+ ++++
  GSBRNA2T00130468001 229 RPVLLLCSH 237
                          899999987 PP
3B352.21.1e-16277376299
                          EEE-..-HHHHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                          ++   +++ +k+g+l   +l+   ++e g+kk  s ++tl d +gr+W  +l+   + +  +  ++++kGW+e+++ang++++D++v++l
  GSBRNA2T00130468001 277 LTRKFTPSRFKTGQLyisMLSSGVLRESGIKK--SGEITLLDNDGRKWPSYLNKtgQPG--GewCYIRKGWREMCEANGVEVNDSFVLEL 362
                          55666788888888844444555566667774..559***************7734444..455************************** PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          +  + +++ +k+++k
  GSBRNA2T00130468001 363 IC-EAANPIFKFHSK 376
                          99.788888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.56194IPR003340B3 DNA binding domain
SMARTSM010195.2E-91194IPR003340B3 DNA binding domain
CDDcd100172.84E-63090No hitNo description
SuperFamilySSF1019363.73E-103491IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-103591IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-18134242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20140238IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-20140237IPR003340B3 DNA binding domain
SMARTSM010191.9E-22140238IPR003340B3 DNA binding domain
PROSITE profilePS5086316.257140237IPR003340B3 DNA binding domain
CDDcd100171.59E-17150236No hitNo description
Gene3DG3DSA:2.40.330.101.3E-13271374IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-14272373IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.574276376IPR003340B3 DNA binding domain
PfamPF023621.3E-17276376IPR003340B3 DNA binding domain
SMARTSM010191.3E-13276377IPR003340B3 DNA binding domain
CDDcd100171.24E-11305375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVVPPPQPSL FQLTFLTGDK PLLQTLDDEF ISSHTKVLLI SDASDKIWEV KLDGNRLAGG  60
WEEFAAVNNF SEGNVLVFRH NGEEIFHVAV SSESDDDESD DTDDSESDDE SNDTDDSESD  120
DSEGDSSLVN KEADSSSDCF LRARVTPYSL TKDRLDLSKD FKFMLFDEHK KPFEIYLVNE  180
KGRKWTLRLS RNISSGAFYI TRGWANFCSA NGLIRGDFCY FKLSESGERP VLLLCSHESG  240
NGHEDKEEEE ECPEADTLKI CSVGGCSNEK NTPSRFLTRK FTPSRFKTGQ LYISMLSSGV  300
LRESGIKKSG EITLLDNDGR KWPSYLNKTG QPGGEWCYIR KGWREMCEAN GVEVNDSFVL  360
ELICEAANPI FKFHSKIKNK GKGNIVTSKK RALHARTVER TPGVEIDGER GSKRGCTRVS  420
NRSNTYLKGK QPESCSVSDQ VANVRQSVLD TLNTIRHFKA ELKTRERNLE ASLLELDGLG  480
EKILGISKIL NNNLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169183KKPFEIYLVNEKGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130468001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551148.10.0B3 domain-containing protein REM1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2U00.0A0A0D3A2U0_BRAOL; Uncharacterized protein
STRINGBo1g011150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-122B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]