PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00129185001 | ||||||||
Common Name | GSBRNA2T00129185001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 46400.7 Da PI: 9.8253 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSBRNA2T00129185001 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.55E-7 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.8E-5 | 62 | 84 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 103 | 133 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.7E-4 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.55E-7 | 133 | 158 | No hit | No description |
SMART | SM00355 | 180 | 138 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MPVDLDKSST VSGEASVSST GNQQNPLPKS AAKKKRNLPG MPDPNSEVIA LSPKTLLATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQKSSQEVKK KVYVCPETSC VHHDPSRALG 120 DLTGIKKHFC RKHGEKKWKC DKCSKRYAVV SDWKAHSKIC GTKEYKCDCG TLFSRRDSFM 180 THRAFCDALA EESVRSHTHG KKQSPEILTR KKPVPDPKPS LAAAPVETQP TIAIKRPESP 240 KTPREVLQEA QEPTDLNGVF FESSSASPSI YASSCSQSLF APSSSIEPIS LGLSTSHGPS 300 FLCSTRFPSQ PAMSATALLQ KAAQMGAASS GGSLLRGLGI VSSTSPSMDS IVPNGLALGL 360 PCGGESSSGL KELMMGNSSV FGPKQTTLDF LGLGRAVGNG GGPGSTLAGP RGGSIDALAT 420 FGSGEFSGND IGRRTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-32 | 134 | 195 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-32 | 134 | 195 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00129185001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353210 | 0.0 | AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115732.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 0.0 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | M4F4U4 | 0.0 | M4F4U4_BRARP; Uncharacterized protein | ||||
STRING | Bra036098.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 0.0 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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