PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00128678001
Common NameGSBRNA2T00128678001, LOC106408016, LOC106408025
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 272aa    MW: 30526.7 Da    PI: 6.3809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00128678001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-14101147354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e+Er RR+++N++f  Lr llP+      +K +Ka+iLe +v YI++L
  GSBRNA2T00128678001 101 MNHVEAERLRREKLNQRFYALRALLPNV-----TKREKASILEDTVTYINEL 147
                          689************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.95898147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16100167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-13101148No hitNo description
PfamPF000102.3E-11102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-13104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNLLNSDDAL LMINTLLNSS DLWPLDPANL SQLPLAPTAI NSSSDLWSYV PANFGQIQYE  60
ESNISASAVK LEDSAHFNID AKTTPEKKRG RRPTHGREEP MNHVEAERLR REKLNQRFYA  120
LRALLPNVTK REKASILEDT VTYINELKVN AENAESEKNA FEIQLNELKE KIAGRRNGSS  180
SVCGGGEKTP EIEVKIDVKV MDRDALIRLE SSKNNHPGAR LMNAFMDLEV EVNHASISVM  240
NNLMIQQVTV KMGSRVYKQE QLRDLLLSKV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-2796175281Transcription factor MYC2
5gnj_B2e-2796175281Transcription factor MYC2
5gnj_E2e-2796175281Transcription factor MYC2
5gnj_F2e-2796175281Transcription factor MYC2
5gnj_G2e-2796175281Transcription factor MYC2
5gnj_I2e-2796175281Transcription factor MYC2
5gnj_M2e-2796175281Transcription factor MYC2
5gnj_N2e-2796175281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592EKKRGRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00128678001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892450.0AC189245.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013704303.10.0transcription factor bHLH28-like
RefseqXP_013704312.10.0transcription factor bHLH28-like
SwissprotQ9LUK71e-77BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A0D3D9M20.0A0A0D3D9M2_BRAOL; Uncharacterized protein
STRINGBo7g075820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.14e-80NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]