PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00128498001

Common Name

GSBRNA2T00128498001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 379aa MW: 41141.5 Da PI: 6.1272

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00128498001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5.1e-31	185	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers+ dp++++itY++eHnh+ GSBRNA2T00128498001 185 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRADPSMLVITYTSEHNHP 243 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-31	178	245	IPR003657	WRKY domain
PROSITE profile	PS50811	32.558	179	245	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-26	182	245	IPR003657	WRKY domain
SMART	SM00774	3.4E-38	184	244	IPR003657	WRKY domain
Pfam	PF03106	6.4E-26	186	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MLSPEISSSP NILPLPQPSP SDLHMNPFGD PFVSMTDPLL QELNAVTNSS HFSTAENNAN 60 NNNRFLVPKV VLEDDQIKSQ CSIFPRIRIS HSNIIHESSP CNSPAMSAHV LAAAAAASPR 120 GIINANTNSP RNCLLVDGNT FSSQIQISSP RNVGLKRRKS QAKKVVCIPA PAAMNSRSSG 180 EVVPSDLWAW RKYGQKPIKG SPFPRGYYRC SSSKGCSARK QVERSRADPS MLVITYTSEH 240 NHPWPIQRNA LAGSTRSCSS NPNSSKSSTT TASHNGPQSN THLPSSASAV KNEQTEEDME 300 LENVEDDNKV APYRPEIHDQ HQPDDFFADL EELELEGDSL SMLLSQGCAG DLNNETIASD 360 GISDFFGWTA GNNNKDDQ*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MLSPEISSSP NILPLPQPSP SDLHMNPFGD PFVSMTDPLL QELNAVTNSS HFSTAENNAN  60
NNNRFLVPKV VLEDDQIKSQ CSIFPRIRIS HSNIIHESSP CNSPAMSAHV LAAAAAASPR  120
GIINANTNSP RNCLLVDGNT FSSQIQISSP RNVGLKRRKS QAKKVVCIPA PAAMNSRSSG  180
EVVPSDLWAW RKYGQKPIKG SPFPRGYYRC SSSKGCSARK QVERSRADPS MLVITYTSEH  240
NHPWPIQRNA LAGSTRSCSS NPNSSKSSTT TASHNGPQSN THLPSSASAV KNEQTEEDME  300
LENVEDDNKV APYRPEIHDQ HQPDDFFADL EELELEGDSL SMLLSQGCAG DLNNETIASD  360
GISDFFGWTA GNNNKDDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	159	245	2	79	Disease resistance protein RRS1
5w3x_D	2e-24	159	245	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00128498001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189628	0.0	AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022544408.1	0.0	probable WRKY transcription factor 14
Swissprot	Q9SA80	0.0	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	M4EBR9	0.0	M4EBR9_BRARP; Uncharacterized protein
STRING	Bra026228.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-171	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]