PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00128207001 | ||||||||
Common Name | GSBRNA2T00128207001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 298aa MW: 33454.8 Da PI: 10.1274 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.4 | 1.9e-23 | 62 | 142 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s + ++ g+ers++qC++k+e+l+kr+++++++++ s +p+++q+e GSBRNA2T00128207001 62 WTEDETLLLIDSYKEKWYAVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 142 ***********************************998899****************************84.....68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.5E-20 | 62 | 144 | No hit | No description |
PROSITE profile | PS50090 | 6.69 | 62 | 119 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MATPSPTPSP PPPSDSNPNP PHQNPPPSSS TAIQTPPSPQ TTVVALGAST SAFARKTQPV 60 LWTEDETLLL IDSYKEKWYA VGRGPLKSNQ WEEISVSVSA RSGVERSATQ CRHKMEKLRK 120 RFRAERQSMG PISIWPFYSQ MEELDSNPAP ISARPLTRLP PPTNHYAEDQ YDDEDDDDED 180 ESLNKSRSIN HIVRRPGTVN RFAGVGGGLL QWGQKERSKR KRKDEGSGGE RRMKGARAVA 240 YEIRAFAEKT MLMEKKKMEF AKETAKLRKE MEMKRLKLIQ SSQTQLLQFL NTSFASL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14382 | 0.0 | leaf| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00128207001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102453.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1 | ||||
TrEMBL | M4DF18 | 0.0 | M4DF18_BRARP; Uncharacterized protein | ||||
STRING | Bra015090.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-129 | Trihelix family protein |
Publications ? help Back to Top | |||
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