PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127966001
Common NameGSBRNA2T00127966001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 451aa    MW: 51202.9 Da    PI: 5.4346
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127966001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.41.2e-21251308155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                          +pr+ Wt +L ++F+ea++  GG++kA Pk +l++   mk++gLt+++v SHLQkYRl
  GSBRNA2T00127966001 251 RPRMSWTGDLQQKFLEAIDIVGGPKKASPKVLLKClhdMKIEGLTRNNVSSHLQKYRL 308
                          59****************************998765559******************8 PP
2Response_reg55.53.3e-19361411107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vd + + +  +++++e+  y +v++ +d+eea++ l  +++++++++ D  mpg++Gl++l  i ++  +lp++++++ ++ e + +
  GSBRNA2T00127966001  36 VLVVDSNLSTLLDMKEIMERCAY-HVTAYADAEEAIAFLtkCKHEINIVIWDYHMPGINGLQALAIIGSKM-DLPVVIMSGDDQTESVMN 123
                          899********************.***************666677**********************6654.8***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                          a+  Ga  +++Kp+ +e +
  GSBRNA2T00127966001 124 AMVHGACHYVMKPVRKE-I 141
                          *************7655.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-2832157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-3034157No hitNo description
SMARTSM004482.9E-1634145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.73235150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-1636142IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.27E-1637145No hitNo description
SuperFamilySSF466894.48E-11249311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-19250312IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-18252308IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSIGHITEDG DKALFLQQET SEINSPLIEF PPSTNVLVVD SNLSTLLDMK EIMERCAYHV  60
TAYADAEEAI AFLTKCKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVV IMSGDDQTES  120
VMNAMVHGAC HYVMKPVRKE IIATIWQHIV RKRMMSKPGL VPPVVVHDDC SKQERDDSVT  180
VDQDDSEQSI DKIEEKATKK RTMICIEETQ PMQSHLVKSN GSDQDDDDSR SVSNYNNEQK  240
IDKKKESYFK RPRMSWTGDL QQKFLEAIDI VGGPKKASPK VLLKCLHDMK IEGLTRNNVS  300
SHLQKYRLSL EENKIPQQFP ETGWSSLSRP SPFLGMNNGF IAPTSLRNGP AVYPVQDNQY  360
QNGYLAMNNN QLVTNNMPGF PYLDNDHHLQ QQHQQRQYQL SNQVMNCMMR KNEPQQAYNG  420
IGLTDLEPNI YPSLPYDPNE FLFDGYNFSN *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in trichomes and siliques. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127966001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613707.10.0PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-134ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLA0A3P6F8J40.0A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.12e-71response regulator 19
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]