PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127806001
Common NameGSBRNA2T00127806001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 313aa    MW: 35230.6 Da    PI: 10.4853
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16244275132
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                          C++C tt+Tp+WR+gp g+ktLCnaCG+++r+
  GSBRNA2T00127806001 244 CTHCETTETPQWREGPCGPKTLCNACGVRFRS 275
                          ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-15238288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49242274IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-14242301No hitNo description
Gene3DG3DSA:3.30.50.105.3E-13242274IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003201.0E-14244276IPR000679Zinc finger, GATA-type
CDDcd002021.28E-13244275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVKPSPQKRL IEIELRLVTS PIWRRLDEEE QHTVVGGTRA SPKTKRLSSS VENDAPYAVE  60
RLGQSRQRKV RQDINPKTRA LRRRENPPDS SLEEGPNEGI GPRVAARRRF EALIFVVASV  120
GTSFLQIDKE IEPRHSAKNS NNHARVQKQS SSSEVSFTID SSLPDVKVST LFQSSSGTQA  180
QYRQRSLKSF ASEMVQQFAP YHSDSKTYHL PSQNAPKNKR QMKNKNQVSD SPDSYNSDGT  240
IRMCTHCETT ETPQWREGPC GPKTLCNACG VRFRSGCLLP EYRPSSSPSF IPSLHSNSHR  300
KIIEMRRKDK PG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127806001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636763.11e-62PREDICTED: putative GATA transcription factor 13
RefseqXP_013636764.11e-62PREDICTED: putative GATA transcription factor 13
RefseqXP_013636765.11e-62PREDICTED: putative GATA transcription factor 13
RefseqXP_013636766.11e-62PREDICTED: putative GATA transcription factor 13
RefseqXP_022556995.11e-62putative GATA transcription factor 13
RefseqXP_022556996.11e-62putative GATA transcription factor 13
SwissprotQ6DBP81e-43GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3C2J40.0A0A0D3C2J4_BRAOL; Uncharacterized protein
STRINGBo4g165240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.28e-35GATA transcription factor 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]