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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127470001 | ||||||||
Common Name | GSBRNA2T00127470001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 948aa MW: 106651 Da PI: 5.7366 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.8 | 3.3e-56 | 20 | 136 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwl++ ei++iL+n++++++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n GSBRNA2T00127470001 20 SEaRNRWLRPPEICEILQNYQRFQISTEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLQCYYAHGHDN 109 4449************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ++fqrr+yw+L+eel++iv+vhylevk GSBRNA2T00127470001 110 ENFQRRSYWMLQEELSHIVFVHYLEVK 136 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.741 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-82 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.2E-49 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.8E-5 | 388 | 476 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.4E-15 | 389 | 475 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.8E-4 | 389 | 475 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 6.7E-14 | 546 | 678 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.22 | 553 | 674 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.95E-14 | 561 | 677 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.30E-9 | 562 | 674 | No hit | No description |
PROSITE profile | PS50088 | 9.297 | 615 | 647 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.28E-8 | 764 | 818 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.049 | 767 | 789 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.974 | 769 | 795 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0016 | 770 | 788 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0054 | 790 | 812 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.432 | 791 | 815 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.0E-4 | 793 | 812 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 948 aa Download sequence Send to blast |
MAEARRFSPN NELDVCQILS EARNRWLRPP EICEILQNYQ RFQISTEPPT TPASGSVFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLQ CYYAHGHDNE NFQRRSYWML 120 QEELSHIVFV HYLEVKGSRV STSYNRMQRT AEDSALSSHE VFTSERDGYA SGSINQYDHN 180 NHSQATDSAS VSGAHTPELE DAESAYNQQG SSIVYSHQQP PSTGFDPLYQ MSLTRNSSYY 240 HLIITNVTWY LQFFFLSSKN YQWSWSKKQK SIDSQTWEEI LGNCGPGAEG LLPLQPNSEH 300 EVLDQILQGS SITMQAPYLS TTKQHLLDGA LGEEGLKKVD SFSRWMSKEL GDVCVIADAN 360 ESFTHSSSTA YLDGYVMSPS LSKEQLFSII DFAPNWTYVG CEVNVLVTGK FLKTREEEAE 420 TREWSCMFGQ TEVPADVIAD GILQCVAPTS EAGRVPFYVT CSNRLACSEV REFEYKVLES 480 QAFGRETDES TESLEARFVK LLCSKSDSPS SNARGDLSQV SEKISLLLFE NDDQLDQMLM 540 NEISQESMQE KLLQEALKER LHSWLLQKIA EGGRGPNVLY EGGQGILHFA AALGYNWALE 600 PTVVAGVSVD FRDVNGWTAL HWAAFFGREL VVGSLIALGA SPGTLTDPNP DFPSGSTPSD 660 LAYANGYKGI AGYLSEYALR AHVSLLSLNE SNAETSESAP SPSSSSLTDS LTAVCNATQA 720 AARIHQVFRA QSFQKKQMKK FGVSEERALS MLAPKTHKQG RAHSDDSVQA AAIRIQNNFR 780 GYKGRKDYLI TRQRIIRIQA HVRGYQVRKN YRKIIWSVGI LEKVILRWRS KGAGLRGFKS 840 DALVDKMQDG TEREEDDDFF KQGRKQTEER LQKALARVKS MAQYPEARDQ YRRLVNVVND 900 IQESKVEKAL ESSEEATCFD NDLIDIEALL GDDDTLMLPM SSTLWNT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6884 | 0.0 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127470001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013664176.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
Refseq | XP_013664177.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X2 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A3P5YUK7 | 0.0 | A0A3P5YUK7_BRACM; Uncharacterized protein | ||||
STRING | Bra038534.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8601 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |