PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00127177001

Common Name

GSBRNA2T00127177001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 286aa MW: 33201.6 Da PI: 6.3228

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00127177001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.7	3.8e-33	27	135	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhk 84 Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +++++++s + + weF ++ GSBRNA2T00127177001 27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPRSFSATILPLYFKHNNFSSFVRQLNTYFWRTSTKRSASSYCemgfrkiEAERWEFMND 116 9********************************************************99999988877555777665449**** PP XXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkkse 103 F g+++ll++ikr++s+ GSBRNA2T00127177001 117 GFLMGQRDLLKSIKRRTSS 135 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.94E-30	23	132	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-44	23	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.0E-34	24	132	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-28	27	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEPSSSSRAW SMPVPMGGLQ EPGPYPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPRS 60 FSATILPLYF KHNNFSSFVR QLNTYFWRTS TKRSASSYCE MGFRKIEAER WEFMNDGFLM 120 GQRDLLKSIK RRTSSSAPPS LHHAQGDPCV ELRQERHVLM MEISRLRQQE QRARGYIQTM 180 EQRINGAEKK QRHMMSFLRR AVQNPALLQQ LLEQQRKELE EASMDQVKPE TVEHVSELEA 240 LALEMQGHGR QRTEEVEREL DDGFWEELLI MNKDEDGVEA NVNAC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-21	11	134	11	131	Heat shock factor protein 1
5d5v_B	3e-21	11	134	11	131	Heat shock factor protein 1
5d5v_D	3e-21	11	134	11	131	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	LKSIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00127177001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237304	0.0	AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603496.1	0.0	PREDICTED: heat stress transcription factor A-7b isoform X1
Refseq	XP_022563556.1	0.0	heat stress transcription factor A-7b isoform X1
Swissprot	Q9M1V5	1e-145	HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBL	A0A0D3DVA7	0.0	A0A0D3DVA7_BRAOL; Uncharacterized protein
STRING	Bo8g098580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14836	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G63350.1	1e-140	HSF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]