PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127124001
Common NameGSBRNA2T00127124001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 420aa    MW: 48035.9 Da    PI: 4.9055
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127124001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25206264155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 
                          kpr+ WtpeLH+ F +ave++GG e+A+Pk+il++m+     +gLt+++v+SHLQkYRl
  GSBRNA2T00127124001 206 KPRMTWTPELHQLFEKAVEKMGGVEQAVPKQILKCMQeekdAEGLTRNNVASHLQKYRL 264
                          79**********************************7333368***************8 PP
2Response_reg57.86.4e-20441481105
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +++vd +p  + l+++++++  y +v+ +++g ea++ l   ++++Dl++ D   p+++Gle+lk+i +e  +lp+++++ + +++++ e
  GSBRNA2T00127124001  44 IVLVDSDPESLCLMKNLMTQFSY-QVRDFKNGAEAIAFLmmSKHEIDLVIWDFHVPEINGLEALKTIGKEM-DLPVVIMSHEHKKKTVME 131
                          689********************.*************99556666**********************6644.7***************** PP

                          HHHTTESEEEESS--HH CS
         Response_reg  89 alkaGakdflsKpfdpe 105
                            k+G   fl+Kp+++e
  GSBRNA2T00127124001 132 STKRGSCNFLVKPVSKE 148
                          *************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.3E-2641181No hitNo description
SuperFamilySSF521729.39E-2441166IPR011006CheY-like superfamily
SMARTSM004481.1E-1342153IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.32743158IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-1744148IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.90E-1546153No hitNo description
PROSITE profilePS5129411.519203267IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-24204265IPR009057Homeodomain-like
SuperFamilySSF466892.69E-14205265IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-21206265IPR006447Myb domain, plants
PfamPF002492.8E-9208263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSVSSNILKE NSRDLLREEE PGDAEVEFPI DDEDEDFSIT SIRIVLVDSD PESLCLMKNL  60
MTQFSYQVRD FKNGAEAIAF LMMSKHEIDL VIWDFHVPEI NGLEALKTIG KEMDLPVVIM  120
SHEHKKKTVM ESTKRGSCNF LVKPVSKEII AVLWQHVYRK RVSIYSVESN PEETVGLDQD  180
DIDLYQTNSN CGEQTSSYQK EDKNKKPRMT WTPELHQLFE KAVEKMGGVE QAVPKQILKC  240
MQEEKDAEGL TRNNVASHLQ KYRLNSGKKS SMIQETREDS EWRNAGPNTA LTASKPLPNS  300
IFGLHTRVPY FANDQDARNG PMQYPSTNYF TMDNAHFMTN SFANLPYTDS FHQQQQFQHQ  360
QYSHSSLQLP SVITKQEFPY VSAALENPDL IANKNSPYMD WGDYLPEGGL SDFDKTNRY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127124001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553350.0AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603444.10.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-124ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A3P6GH570.0A0A3P6GH57_BRAOL; Uncharacterized protein
STRINGBo8g098010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-98response regulator 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]