PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127094001 | ||||||||
Common Name | GSBRNA2T00127094001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 34001.6 Da PI: 6.7936 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 1.9e-31 | 130 | 188 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v++s+fprsYYrCt + C+vkk+vers +d+++v++tY g+H+h+ GSBRNA2T00127094001 130 LDDGYKWRKYGQKPVRNSPFPRSYYRCTISCCNVKKRVERSFTDQSCVITTYIGQHTHP 188 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-31 | 116 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.057 | 125 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-27 | 126 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-34 | 130 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-24 | 131 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEKTGAGMAF SNLGQTRVDP SLSDSSWERY PVGFMELLGV HHQDSSRYAL SHIPPMQLTA 60 TPNPSSPISY ALCEAVTGEE NNRYYQEHED DEEEQKHTRN KRFKSTRSSE QTKMKAPRVS 120 FITKSLVNNL DDGYKWRKYG QKPVRNSPFP RSYYRCTISC CNVKKRVERS FTDQSCVITT 180 YIGQHTHPRP LILSRQGSFG SDGPASESYF DVTPTLPSQL HQPFHYNNHH QHQSQGLSLF 240 GTEYLSRQEK ELNHDDEYDD HLIKTSRTQD LLDGAGLVKD NGLLQDVVPA HIINEEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-22 | 123 | 190 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-22 | 123 | 190 | 10 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127094001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 1e-161 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603970.1 | 0.0 | PREDICTED: probable WRKY transcription factor 68 | ||||
Refseq | XP_022563689.1 | 0.0 | probable WRKY transcription factor 68 | ||||
Swissprot | Q93WV6 | 1e-93 | WRK68_ARATH; WRKY transcription factor 68 | ||||
TrEMBL | A0A3P6FZN0 | 0.0 | A0A3P6FZN0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g097780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15068 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62340.1 | 2e-94 | WRKY family protein |
Publications ? help Back to Top | |||
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