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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127051001 | ||||||||
Common Name | GSBRNA2T00127051001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 36181 Da PI: 8.1462 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 157 | 205 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y k GSBRNA2T00127051001 157 QRINHIAVERNRRRQMNEHISSLRSLLPPS---YIQRGDQASIVGGAINYAK 205 699***************************...9****************66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.25E-10 | 155 | 212 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 156 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-16 | 156 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.294 | 156 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-9 | 162 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MERFQGHINP CFLDQNADGR SLEAQSFAFK EEEEEESMQN TVPFLQMLQS EEDPLPFTSF 60 KELLSLQNLH NHWELDSYLS HNETYPVSTT SMEVTRQALS SQELPFSRQQ DMTVPSSSST 120 PNSRRKRKII SNNPPEVTRG KRRKTKPSKD IEEIENQRIN HIAVERNRRR QMNEHISSLR 180 SLLPPSYIQR GDQASIVGGA INYAKVLEQV IKSLELQKRT KQSSVVQNRV TCVPRIEATL 240 IQNHVNLKVE CRKKQGQLLK GIVSLEKLRL TVLHLNISSL SCSSVSYCFN LKMEDDCKLE 300 SAEEITKVAH QIFDT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 143 | KRKIISNNPPEVTRGKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14055 | 0.0 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127051001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602621.1 | 0.0 | PREDICTED: transcription factor bHLH67 | ||||
Swissprot | Q700E4 | 1e-125 | BH067_ARATH; Transcription factor bHLH67 | ||||
TrEMBL | A0A3P6FY23 | 0.0 | A0A3P6FY23_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g097470.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61950.1 | 1e-123 | bHLH family protein |
Publications ? help Back to Top | |||
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