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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127023001 | ||||||||
Common Name | GSBRNA2T00127023001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 150aa MW: 16389.6 Da PI: 10.5947 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.2 | 1.9e-12 | 49 | 116 | 20 | 86 |
trihelix 20 rlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +lrrg+l++++W++v++ + +g ++++qC++k+e+l+kry+ +k++ + + ss++ +f l+ GSBRNA2T00127023001 49 ALRRGNLRAADWDDVAASLpTFGGPAKTAIQCRHKIEKLRKRYRGEKQRCLTKPGKFSSSWDLFPVLD 116 6799***************6667889***********************9999899999****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.4E-13 | 52 | 118 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MNPPSPPPSI LPPPSPSRPP LPGESRLRAG PTRRPPRSSM PTKTSGSFAL RRGNLRAADW 60 DDVAASLPTF GGPAKTAIQC RHKIEKLRKR YRGEKQRCLT KPGKFSSSWD LFPVLDAMEL 120 ASVTSTAVEP NDQDVDRENE SNGVDEFRV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127023001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108291.1 | 1e-101 | PREDICTED: uncharacterized protein LOC103833990 isoform X1 | ||||
Refseq | XP_018509389.1 | 1e-101 | PREDICTED: uncharacterized protein LOC103833990 isoform X1 | ||||
Refseq | XP_018509390.1 | 1e-101 | PREDICTED: uncharacterized protein LOC103833990 isoform X1 | ||||
Refseq | XP_018509391.1 | 1e-101 | PREDICTED: uncharacterized protein LOC103833990 isoform X1 | ||||
TrEMBL | A0A3P6C2W8 | 1e-100 | A0A3P6C2W8_BRACM; Uncharacterized protein (Fragment) | ||||
TrEMBL | M4DX26 | 1e-100 | M4DX26_BRARP; Uncharacterized protein | ||||
STRING | Bra021072.1-P | 1e-100 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10483 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 1e-16 | Trihelix family protein |
Publications ? help Back to Top | |||
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