PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00126439001 | ||||||||
Common Name | GSBRNA2T00126439001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 202aa MW: 22303.1 Da PI: 9.6386 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 132 | 6.3e-41 | 35 | 161 | 4 | 139 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++ C+dCGn+akk+C++eRCRtCCksrg++CathvkstW+p++ +++++ ++ +++++k+ + ++s+k + l +++s GSBRNA2T00126439001 35 EEKVCRDCGNRAKKECSFERCRTCCKSRGYKCATHVKSTWIPSSSSSHHHHSPSS---------DRNRKKKLKIDSSNKPTVLIVPTTTS 115 6789***************************************999886332222.........33344455555556666666666666 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsig 139 +++++ lP +++++avf+++rv+++++ ++ e++Yq++v+i GSBRNA2T00126439001 116 RRQERSFREG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIH 161 6655555544.*******************9857789********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.6E-36 | 37 | 161 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-25 | 38 | 78 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.3E-15 | 126 | 160 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MLGLRNIILL PPPSQIIHPS VEDNNNNKAR NSNVEEKVCR DCGNRAKKEC SFERCRTCCK 60 SRGYKCATHV KSTWIPSSSS SHHHHSPSSD RNRKKKLKID SSNKPTVLIV PTTTSRRQER 120 SFREGLPGKI EAPAVFKRTR VTAISNEEQS EIGYQATVTI HDGVRLCYGG ANRATVEARN 180 LASSEAVETD SGSCWSVVEV P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15897 | 1e-146 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00126439001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139241.1 | 6e-95 | PREDICTED: protein SHI RELATED SEQUENCE 6 | ||||
Swissprot | Q9M2U4 | 2e-70 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | M4DE97 | 1e-124 | M4DE97_BRARP; Uncharacterized protein | ||||
STRING | Bra014818.1-P | 1e-125 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 1e-70 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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