PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126232001
Common NameGSBRNA2T00126232001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 233aa    MW: 26369.9 Da    PI: 8.2125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126232001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-095298354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r+h e Er RR+riNs++++Lr ll  +     +K +Ka+ L k+v+ +++L
  GSBRNA2T00126232001 52 RKHREGERMRRERINSSLNKLRNLLSCN-----PKTDKATLLAKVVQRVNEL 98
                         5699*********************997.....7***********9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.094998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1149104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-75298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1053109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-5135211No hitNo description
SuperFamilySSF550217.78E-5135211No hitNo description
CDDcd048734.15E-4136205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQPEISDQIL YSFLIGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT LRKHREGERM  60
RRERINSSLN KLRNLLSCNP KTDKATLLAK VVQRVNELKQ QTLEISNENV PSETDEISVL  120
NFENCSNDDG RIIFKVSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDLVVV  180
GNKEQHSVES VKLLQNAFES LLERSNQSVM MGHGGGRERS KRRRPLDHIK RV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126232001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573644.11e-172putative transcription factor bHLH107
SwissprotQ9LET01e-101BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A397ZHI31e-171A0A397ZHI3_BRACM; Uncharacterized protein
TrEMBLM4DDV31e-171M4DDV3_BRARP; Uncharacterized protein
STRINGBra014672.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]