PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125630001
Common NameGSBRNA2T00125630001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 362aa    MW: 41393.8 Da    PI: 5.3858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125630001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.41.6e-2471375128
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra......tksgyWkat 86 
                          ++F+P d++lv +yL+++v++ k     +i+++++y+ ePw Lp   + + +e+ w++F+ r ++   g+r++r+       + g+W ++
  GSBRNA2T00125630001   7 LKFSPIDQNLVGYYLRNRVDTGKD---GFITDIKLYEDEPWLLPhVkNDQFKENMWFYFVVRTRNL--GSRPKRTvpgrgsSNGGTWTTS 91 
                          79*******************994...45***************422333377899****999975..7788886566666779****** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          g +k+++++   + ++g k+ L+++k+   +pkg  t W+m ey l
  GSBRNA2T00125630001  92 GVKKAITDRnnPKVVIGYKTELAYHKKvkGKPKGDTTGWCMTEYWL 137
                          ********85455669*********7544799************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.7943156IPR003441NAC domain
SuperFamilySSF1019413.01E-274154IPR003441NAC domain
PfamPF023654.9E-146136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAHPRDLKFS PIDQNLVGYY LRNRVDTGKD GFITDIKLYE DEPWLLPHVK NDQFKENMWF  60
YFVVRTRNLG SRPKRTVPGR GSSNGGTWTT SGVKKAITDR NNPKVVIGYK TELAYHKKVK  120
GKPKGDTTGW CMTEYWLASE NDAQFQEVVL CHLRDNNKMV VDESKNGDND IFTEQQPQQG  180
NSDDNNNRLL DFTHQQRPLI PPFEADDSRF SVQYMTPSGE GQGLGLQTIM GYSDKATQEQ  240
QQHPPISPPP QRQDSGSINN ALVIMEDECV SQDEIFNLAD LEAGITHPQQ EHRQMMVDPY  300
DDISFSRLAM PNNLIYHHED SWHQDTSPWN NTNPRGLIFN SHGCEIQDQT VTKGHNQDSY  360
Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.252960.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125630001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651896.20.0NAC domain-containing protein 18-like
RefseqXP_022575108.10.0NAC domain-containing protein 18-like
TrEMBLA0A078F5990.0A0A078F599_BRANA; BnaA05g13270D protein
STRINGBra037078.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-15NTM1-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]