PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125310001
Common NameGSBRNA2T00125310001, LOC106388834
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 451aa    MW: 47670.2 Da    PI: 7.764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125310001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-125175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C +++rtG C yG+rC+F+H++
  GSBRNA2T00125310001 51 EPDCIYYLRTGVCGYGSRCRFNHPR 75
                         689********************96 PP
2zf-CCCH40.25.7e-1399124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f+rtGtCkyG++Ck++H++
  GSBRNA2T00125310001  99 GQPVCQHFMRTGTCKYGASCKYHHPR 124
                          5789********************96 PP
3zf-CCCH39.49.8e-13145169226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  GSBRNA2T00125310001 145 GEKECSYYMRTGQCKFGLTCRFNHP 169
                          7899********************9 PP
4zf-CCCH40.16e-13295319226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  GSBRNA2T00125310001 295 DQPECQYFMRTGDCKFGASCRYHHP 319
                          689*********************9 PP
5zf-CCCH32.61.3e-10341366227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF H++
  GSBRNA2T00125310001 341 GVAQCTHFAQHGICKFGPACKFDHSM 366
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0234876IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-54875IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27797125IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-697124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-798124IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1099124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6102124IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6145172IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4149168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91293321IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6293320IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10295319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4299318IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4339366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554339367IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5342366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSVEW SSHGGETRVE ASMWRLGLSG GGEAYPERSN EPDCIYYLRT  60
GVCGYGSRCR FNHPRDRGAV VGGVRGGGGG DGALPERMGQ PVCQHFMRTG TCKYGASCKY  120
HHPRQGGGSV APVSLSYLGY PLRPGEKECS YYMRTGQCKF GLTCRFNHPV PQPQQQPQTQ  180
TIYPTFQSQP MPSSQQYGLV LTRPSLLPGS YLPSPYGQPM VLPPGMVTYP NWNPYQASLT  240
AMPSPGTGTQ QSIGSSSVYG IAPLSPSGTG YTGTYQSGGP SLTTSKEEPF PQRPDQPECQ  300
YFMRTGDCKF GASCRYHHPL DAVQTNTGVL LSPIGLPLRP GVAQCTHFAQ HGICKFGPAC  360
KFDHSMASSL SYSPSASSLT DMPVAPYPIG SSTLSGASAP VSSSIEPTTE AVTAVVSSPM  420
VSGLSSQEPA ETGGDSASIS GSIEAKTSSS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.55831e-179leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125310001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684449.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A078F4X20.0A0A078F4X2_BRANA; BnaC03g34690D protein
STRINGBo3g060560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]