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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00125166001 | ||||||||
Common Name | GSBRNA2T00125166001, LOC106388982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 33225 Da PI: 8.1189 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.2e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G+C+yG rC++ H+ GSBRNA2T00125166001 34 VCTFYLK-GICSYGTRCRYEHV 54 5******.***********997 PP | |||||||
2 | zf-CCCH | 20.4 | 8.9e-07 | 77 | 98 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg GSBRNA2T00125166001 77 PICS-FAAAGDCPRGSQCPHMHG 98 7899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.784 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 30 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 34 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0039 | 74 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.8E-10 | 123 | 201 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 5.14E-13 | 131 | 206 | No hit | No description |
CDD | cd00162 | 0.00253 | 141 | 201 | No hit | No description |
PROSITE profile | PS50089 | 12.386 | 142 | 200 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 6.4E-8 | 142 | 199 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 8.7E-8 | 142 | 199 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 166 | 175 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.404 | 229 | 258 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.53 | 229 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNVCTFYLK GICSYGTRCR YEHVRTSKRD 60 GDHKALNLCY THPREHPICS FAAAGDCPRG SQCPHMHGDV CSTCGKKCLH PFRPEEREEH 120 TKECEKKQKH IEALKKSQEI ECSVCLDRVL SKATPGERKF GLLTECHHPF CIQCIRNWRS 180 SAPVSGMDVN STLRACPICR KLSYFVVPSV VWYSSPEEKK EIIDIYKAKL RSIDCKHFNF 240 GNGSCPFGGS CFYKHAYTDG NLEEVVVRHL GSQGETVIAD SVAGLSEFLG RVHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15964 | 0.0 | bud| leaf| microspore-derived embryo| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00125166001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628160.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin-like | ||||
Refseq | XP_013628161.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin-like | ||||
Refseq | XP_013684616.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Refseq | XP_013684617.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q6IDS6 | 0.0 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A078F3I5 | 0.0 | A0A078F3I5_BRANA; BnaC03g35670D protein | ||||
TrEMBL | A0A0D3BAA3 | 0.0 | A0A0D3BAA3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g061660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-172 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106388982 |
Publications ? help Back to Top | |||
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