PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00124709001 | ||||||||
Common Name | GSBRNA2T00124709001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 393aa MW: 44403.3 Da PI: 9.6553 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.3 | 2.7e-31 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ GSBRNA2T00124709001 67 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 63 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.475 | 63 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-15 | 64 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-24 | 67 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-9 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MRSSSQSSEN SKKTDNKDEE EDEEERSADQ SPSKNSYLEE NGSHHHNNDQ IKKSGGSVRP 60 YNRSKTPRLR WTPELHICFL QAVERLGGPD RATPKLVLQL MNVKGLSIGH VKSHLQMYRS 120 KKIDDTNQGW FRDQRFSFEH GAGYTYNLRQ LPMLQSFDQS PTSLGYGGGS WTGHRQHVYH 180 SPWRGLTARD NTRTRQTLFG SQPGERFHGV SNSILDDKNS TVWFRINSHE AAHANNGVGE 240 AVPRMHRSFL EGMKTFNKSW GQSLASNPNS WTASKPQSHI AATLSSNQRD NPLVAEKMEN 300 VLKKKRLLLS DDCNNSDKDL DLSLSFKVPR SHNNLGDCLL EEEKEHADSK GLSLSLYSSS 360 FAKLGQIIRK EDQNYHKKRK CSVLASPLDL TL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00124709001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133426.1 | 0.0 | PREDICTED: uncharacterized protein LOC103857923 | ||||
TrEMBL | A0A078F3G4 | 0.0 | A0A078F3G4_BRANA; BnaA03g18990D protein | ||||
STRING | Bra000180.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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