![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00124696001 | ||||||||
Common Name | GSBRNA2T00124696001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 28667.4 Da PI: 9.7515 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.5 | 8.7e-13 | 155 | 208 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r + g+Wk t ++++++k++++ g k+++v+yk+ + k kt Wvm ey+l GSBRNA2T00124696001 155 RRESEGGRWKRTSGQEAIMDKTNKVEGYKESFVYYKKLKGKEDKTGWVMTEYSL 208 578899*******************************99999**********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.295 | 82 | 224 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-7 | 155 | 208 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-15 | 155 | 223 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MKATKAPSSS AHVSGGWFGF FSNASSVLSP GGTGFHSLLS SDLVELSGGP PKAEEISWID 60 GTPRREDRAM KSDEGFVGGL VVFELWRREG CRRKSRRSCV AVAIKSRRAT RVTLMLQIST 120 RGSIPSLLDS RIGQAARGTE EVSRLESVNW TVPGRRESEG GRWKRTSGQE AIMDKTNKVE 180 GYKESFVYYK KLKGKEDKTG WVMTEYSLHE GVHDELVLCY IRGKTEKKVE PKLVPKVENN 240 ILSNQVQDEE AGAGDAAQLA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00124696001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189266 | 9e-80 | AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078EZT4 | 0.0 | A0A078EZT4_BRANA; BnaA03g19110D protein | ||||
TrEMBL | M4C7L4 | 0.0 | M4C7L4_BRARP; Uncharacterized protein | ||||
STRING | Bra000192.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27300.1 | 2e-07 | NTM1-like 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|