![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00124423001 | ||||||||
Common Name | GSBRNA2T00124423001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 966aa MW: 107716 Da PI: 6.0365 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.7 | 9.2e-53 | 34 | 149 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwlk+ e++ iL+n+e++elt++++++p+sgsl Lyn++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah+e++ GSBRNA2T00124423001 34 QEaQTRWLKPPEVYFILKNHERYELTHKAPHKPTSGSLCLYNKRVLKFFRKDGHHWRKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHD 123 6669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 p+fqrr++w+L+ e+++ivlvhy++v GSBRNA2T00124423001 124 PSFQRRIFWMLDLEYDHIVLVHYRDV 149 ************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 72.025 | 29 | 155 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.4E-69 | 32 | 150 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.8E-45 | 35 | 149 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.0E-9 | 421 | 512 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 7.28E-18 | 425 | 509 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 4.78E-8 | 425 | 510 | No hit | No description |
Pfam | PF01833 | 7.2E-10 | 425 | 508 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 9.7E-15 | 602 | 698 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.91 | 603 | 695 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-15 | 605 | 697 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.15E-13 | 623 | 695 | No hit | No description |
Pfam | PF12796 | 3.5E-7 | 624 | 696 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.018 | 636 | 665 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.686 | 636 | 668 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3500 | 675 | 704 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 11 | 749 | 771 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.004 | 750 | 778 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.25E-11 | 750 | 847 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.51 | 796 | 818 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 797 | 823 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0041 | 798 | 817 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.4E-4 | 819 | 841 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.7 | 820 | 844 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 8.9E-5 | 821 | 841 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 966 aa Download sequence Send to blast |
MCIFVALSEP SSPVFITNFW SHEFIKYEIR TLNQEAQTRW LKPPEVYFIL KNHERYELTH 60 KAPHKPTSGS LCLYNKRVLK FFRKDGHHWR KKRDGRAIAE AHERLKVGNV EALNCYYAHG 120 EHDPSFQRRI FWMLDLEYDH IVLVHYRDVS DAKEGKQSSG TVLQFSLKPS TLFSSPSYSH 180 HIGDSSTDIQ QQHSEANSGV VFSSNGGEEG SGSSYEFENR EAFKRLEEQL SLGDDNNLVP 240 NESLDGLQFL DFSTDVDHLV PPPATIHQRP ESSSKLGRCY GGYVGPQYNV AGQQRQESNR 300 LERSYGGYIG TEYHPNNLML VNNGSGGSGG SGESWKDVLE ACGASIALNS QEDSNWTYIN 360 QADQATLLLP QELDSSLQLP PPCYSELRAP ENNGYYNTML DDEGQTGPPL EQVMNPTVAY 420 NQKFTIQDIS PEWGYANETT KVIIIGSFLC DPTESTWACM FGNAQVPFEI VKEGVIRCQA 480 PPCGPGKVNL CITSGDGLSC SQIVEFEYRD KPDDRSSPRS SPDVLWLLVK FVQTLLLDRK 540 GNIEPSTDDD EWRRIIDKIR DGTATSSSTV DWLLQELLKD KLAAWLSSRS QDKDQTSCSL 600 SKQEQGIIHM VAGLGFDWAL SPILGHGVSI DFRDDNGWSA LHWAAQLGSE KMVAALIASG 660 ASAGAVTDPN TQDPVGKTPA SIAASNGHKG LAGYLSEVAL TNHLSSLTLE ETEDSIESAR 720 AEAEIAVKSI AGKSHPVNDD PQSLAALKNA AEAAARIQAA FRAHSFRKRQ QREADMYACL 780 KEYGIYADMS KQNVRNYHSA ALSIQKKYRG YKGRKEFLTK RQKAIMIQAH VRGYQTRKQY 840 KVICWAVGML DKVILRWRRK GVGLKGFRQD VESGEESEDE DILRVFRKQK VEGAVNEAFS 900 RVMSMTRTPE ARQQYHRVLT TYCKKKAELG KTETLGIGGS GGGFEDDDAL FDIADMEDDH 960 LFSLP* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.19840 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00124423001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 1e-125 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105129.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A078F224 | 0.0 | A0A078F224_BRANA; BnaA07g25100D protein | ||||
STRING | Bra004096.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|