PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124377001
Common NameGSBRNA2T00124377001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 537aa    MW: 60283.8 Da    PI: 6.2916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124377001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05235336
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         er C+ ++  ++  +C  +   lC +C  + H+ 
  GSBRNA2T00124377001  2 ERLCEVCKAYRAVVYCIADAASLCLTCDAKVHSA 35
                         689*************************999954 PP
2zf-CCCH40.45e-13459483226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tGtC+y d C+FaHg
  GSBRNA2T00124377001 459 KTELCNKWQETGTCPYADHCQFAHG 483
                          9***********************8 PP
3zf-CCCH17.76.4e-06496521126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykte Cr  +++  C+yG rC+F H+
  GSBRNA2T00124377001 496 YKTEVCRMVLAGDVCSYGHRCHFRHS 521
                          9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.93147IPR000315B-box-type zinc finger
SMARTSM003363.5E-7147IPR000315B-box-type zinc finger
CDDcd000211.30E-4335No hitNo description
Gene3DG3DSA:4.10.1000.105.7E-17452490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-10454489IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8457484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934457485IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9459483IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-11491524IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8491526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84495523IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4495522IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MERLCEVCKA YRAVVYCIAD AASLCLTCDA KVHSANALSG RHLRTLLCGF CKNQPCVVRC  60
LDHKMFLCTG CNDKIHGVVS SKHVRHDVRC YTGCPSAKDF AVMWGFRVMD NDVSLEKSFA  120
MAKPKVQREA GFVLEQILEL EKLQLREENK VLSLTEHADP SPLELPKQSE ERLVDLRQTG  180
KELIVDFSHL SSSSTLGDSF WECKSPFSKS YQLWHQNLQD IGVCEDTVCD DDDFHIPDID  240
LTFQNFEELF GADPDPTTDN YKLREMNTFS SPSSKPASSS LSFSRSNGGG SSKTHCSHNH  300
SDEVISICSP LSNNARQKAI SRLKEKKRAR TEEKQKQKMN TERVSYLFIT MLLFWNNENQ  360
SPAADENRAD DVSNQDLNRS SLPKSISVRS SGYSKASQGG GVVSQSRGAI PKPGACAQQL  420
TTTQKVYVRG GKKEEEEEEE EEEEEEEIEV EVYNQGMTKT ELCNKWQETG TCPYADHCQF  480
AHGIKELRPV IRHPRYKTEV CRMVLAGDVC SYGHRCHFRH SLSDQEKLTA AGDVCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-18459521567Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239840.0leaf| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124377001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649125.10.0putative zinc finger protein At1g68190 isoform X2
RefseqXP_022544772.10.0putative zinc finger protein At1g68190 isoform X1
SwissprotQ9C9F41e-176COLX_ARATH; Putative zinc finger protein At1g68190
TrEMBLA0A078F6X10.0A0A078F6X1_BRANA; BnaA07g24720D protein
STRINGBo6g097240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM832022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-72C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]