PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00124375001

Common Name

GSBRNA2T00124375001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 294aa MW: 32696.2 Da PI: 6.7161

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00124375001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	115	158	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 a n++E+rRR +i++++e+L++l P++ kK + a++L ++ I+ GSBRNA2T00124375001 115 ARNIAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASTLDCIIDNIR 158 78************************9.....89999999998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.62E-8	106	162	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-10	108	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-11	108	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.471	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	115	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSNMNNDQES IQFWSSLLHS LADSDPKDDH LPEISSPIMV MSTSMAIDVS PKPFNAPRDG 60 HKAGPQKAIV ETGDGSIDEG GQRSAEKHIE VIKKEGEKEE IKNFGKSKRP RTTEARNIAE 120 KRRRTDIKTK IENLKQLTPN CKKRDIASTL DCIIDNIRWM KHYVESQSMG PMLPLGIKMD 180 FPAPWFPSIP PNFIMPPFSG FTPGETSCAY GNQNIEPSTT KVYDSYSFTV VHLTSLENLL 240 GVQPAAVRTD ITSKNHSANL SLVTRMSDHW AEFFNTMSEL ATVTIWACPC AIP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00124375001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016447	2e-44	AC016447.5 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence.
GenBank	BT026077	2e-44	BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBank	CP002684	2e-44	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ056514	2e-44	DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
GenBank	DQ446410	2e-44	DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022568090.1	1e-150	putative transcription factor bHLH056 isoform X1
TrEMBL	A0A078F1W7	0.0	A0A078F1W7_BRANA; BnaA07g24700D protein
STRING	Bo6g097200.1	1e-148	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15740	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	1e-11	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]