PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124359001
Common NameGSBRNA2T00124359001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 316aa    MW: 35076.1 Da    PI: 4.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15114161253
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          +  GVr++k +g+W+AeIr+p     +  r +lg+f+t+e A++a+i+ r+++
  GSBRNA2T00124359001 114 KRVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTFDTEEAAYQAYIEKRREY 161
                          568*****9.**********72....36**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-18113154No hitNo description
SMARTSM003801.5E-14114174IPR001471AP2/ERF domain
PROSITE profilePS5103216.766114171IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-14115165IPR016177DNA-binding domain
PRINTSPR003678.5E-6115126IPR001471AP2/ERF domain
PfamPF008473.7E-9116162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17117158IPR001471AP2/ERF domain
PRINTSPR003678.5E-6137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVVISKQQSL VDMKKPKRSN SLLSLSSHPQ DTHQPLRKVR IIVNDPYATD DSSSDEEEVV  60
KQPRQVKRIV REVNFPPLQP PRVEPSVSSS QDSTKTTSKK IVSASASPAL RPKKRVGVRQ  120
RKWGKWAAEI RHPITKIRTW LGTFDTEEAA YQAYIEKRRE YDALVGITND SVSETSQCSR  180
SSPLEQDTSA SALTCVKPNE EEEVKIPTTD VDSGKEVLFD FNFADLPIPD FGFFEEPMGP  240
AGVDEQDLDF DCFFTDDQLD DFGLLDDING FGDCGPSALP DFDFADLGLE LPGSGFLGDQ  300
NVPQHITCTR KSFAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281600.0leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124359001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893080.0AC189308.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649115.10.0ethylene-responsive transcription factor ERF118-like
RefseqXP_013649116.10.0ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-106EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A078EZ590.0A0A078EZ59_BRANA; BnaA07g24590D protein
STRINGBra004033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-92ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]