PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00123979001

Common Name

GSBRNA2T00123979001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 270aa MW: 30921.2 Da PI: 8.3111

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00123979001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.6	4e-12	18	110	3	99
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 k l+p + ks ++ ++p +f+++ ++ + +++ ++++sW++ l r +++ +++++ W eFv++n L D++vF++++++ f GSBRNA2T00123979001 18 KSLSPGQNWKSkSMRIIPEEFLRSTHES--FEHRVVFSVPWNNSWQLWL--RPDKKGlFMIKEDWDEFVDDNFLGPDDTLVFTHQDTMYF 103 55555555555255699***998644..4457***********..8888888***********************9887888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 v++f+k GSBRNA2T00123979001 104 --QVQIFKK 110 ..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.7E-15	13	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-15	14	111	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	9.9E-13	16	111	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.997	17	111	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-9	28	110	IPR003340	B3 DNA binding domain
CDD	cd10017	6.66E-12	28	109	No hit	No description
SuperFamily	SSF101936	5.69E-9	168	253	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.5E-7	169	256	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.095	175	268	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	7.246	232	269	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MLQERKMQEC LSKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW 60 QLWLRPDKKG LFMIKEDWDE FVDDNFLGPD DTLVFTHQDT MYFQVQIFKK DGKEIISAPL 120 GLEPQKETTS ASGNTIQIEK KPSSSSGRTT TRGRKSCANL QNPERYLLNP QNPYFAKTLK 180 KTNHLLHVGL PVIRQYGLEF GPHDSSMYFI LPDGNKVDGL TKYYNGLPSF LGWADVCQQY 240 NLKIGDTVVC EFELSGRVVA AVRVHFLNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00123979001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135555.1	0.0	PREDICTED: B3 domain-containing protein At5g25470-like
Swissprot	Q680D9	1e-102	Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBL	A0A3P5ZN24	0.0	A0A3P5ZN24_BRACM; Uncharacterized protein
STRING	Bo3g071320.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25475.3	1e-91	B3 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]