PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123895001
Common NameGSBRNA2T00123895001, LOC106358155
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 184aa    MW: 19387.7 Da    PI: 10.0765
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123895001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.2e-184478135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt  TplWR gp g+k+LCnaCG++ rkk++
  GSBRNA2T00123895001 44 CVDCGTLRTPLWRGGPAGPKSLCNACGIKSRKKRQ 78
                         *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-113893IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-123879No hitNo description
PROSITE profilePS5011412.3083892IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-144278IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.72E-124393No hitNo description
PfamPF003207.2E-164478IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404469IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSEGSVESKS KVDSAGELSD VDNENCSSSG SGGGGSSGET KRTCVDCGTL RTPLWRGGPA  60
GPKSLCNACG IKSRKKRQAA LGIKPEEKKR NRKSNSSSDS DLSFDDHRDA KKKTNKGGDD  120
SSSSKRASNS SSSEGVSKYL DLGFKVPVMK RSAVEKKRLW KKLGEEERAA VLLMALSCGS  180
VFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190081e-119seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123895001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893172e-77AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626140.11e-126PREDICTED: GATA transcription factor 17-like
RefseqXP_013653360.11e-126GATA transcription factor 17
SwissprotQ9LIB56e-83GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3BBP51e-125A0A0D3BBP5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AVH61e-125A0A3P6AVH6_BRAOL; Uncharacterized protein
STRINGBo3g068560.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.13e-72GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]