PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00123678001

Common Name

GSBRNA2T00123678001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 373aa MW: 41018.9 Da PI: 9.4621

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00123678001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.1	3.1e-15	89	176	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk++k + +++ + +s++++fd+l+ GSBRNA2T00123678001 89 CWSEKATAVLIDAWGERYMELSRGNLKQKHWREVAEIVsgmeDYGKTAKTDIQCKNRIDTVKKKYKQEKVRISSG--GGRSRWVFFDKLD 176 7***********************************99877788899*******************997..56668****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-24	87	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEDEEEIQSR ASSSPDPSPS PPPGGVTVTV ASTGPPSYSL TPPSSSSQQQ RDPNALALAL 60 LPSGGGGGGG GGSSSNGRAS GGGGGREDCW SEKATAVLID AWGERYMELS RGNLKQKHWR 120 EVAEIVSGME DYGKTAKTDI QCKNRIDTVK KKYKQEKVRI SSGGGRSRWV FFDKLDRLIG 180 STAKIPAIGS PGGGLNKIPM GIPMDSRSNV YHQQQVRTLP QQQQGMMMVK RCSESKRWRF 240 SKRNATDSDS EESDAAPMSD DDSGDSLPPP PLSKRMKQEG GNKWRELSRA IMRFGEAYEQ 300 TENAKLQQVV EMEKERMKFL KEMELQRMQF FVKTQLEISE IKEQGRRMGN TSNDHHKSKN 360 NMNEIVNKDV GN*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEDEEEIQSR ASSSPDPSPS PPPGGVTVTV ASTGPPSYSL TPPSSSSQQQ RDPNALALAL  60
LPSGGGGGGG GGSSSNGRAS GGGGGREDCW SEKATAVLID AWGERYMELS RGNLKQKHWR  120
EVAEIVSGME DYGKTAKTDI QCKNRIDTVK KKYKQEKVRI SSGGGRSRWV FFDKLDRLIG  180
STAKIPAIGS PGGGLNKIPM GIPMDSRSNV YHQQQVRTLP QQQQGMMMVK RCSESKRWRF  240
SKRNATDSDS EESDAAPMSD DDSGDSLPPP PLSKRMKQEG GNKWRELSRA IMRFGEAYEQ  300
TENAKLQQVV EMEKERMKFL KEMELQRMQF FVKTQLEISE IKEQGRRMGN TSNDHHKSKN  360
NMNEIVNKDV GN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	72	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00123678001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP000600	8e-78	AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBank	AY072187	8e-78	AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBank	AY113853	8e-78	AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBank	CP002686	8e-78	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013686349.1	0.0	trihelix transcription factor ASIL2 isoform X2
Refseq	XP_022554366.1	0.0	trihelix transcription factor ASIL2 isoform X1
Swissprot	Q9LJG8	1e-171	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A3N6Q5U2	0.0	A0A3N6Q5U2_BRACR; Uncharacterized protein
STRING	Bo3g065930.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-126	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]