PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123653001
Common NameGSBRNA2T00123653001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 444aa    MW: 49428.8 Da    PI: 9.8161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123653001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00123653001 74 FVCEICNKGFQRDQNLQLHKRGH 96
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.06E-67396No hitNo description
PfamPF121713.7E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9077496IPR007087Zinc finger, C2H2
SMARTSM003550.0177496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355240116146IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.06E-6146171No hitNo description
SMARTSM00355180151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MMSKDILLHQ QVQQQQQQEE NMSNLTSASG DQTTTTTTTT TTPQKKRRNQ PGNPDPESEV  60
IALSPKTLMA RNRFVCEICN KGFQRDQNLQ LHKRGHNLPW KLKQRSNKEV IRKKVYVCPE  120
ASCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDCKAHS KTCGTKEYRC  180
DCGTIFSRRD SFITHRAFCE ALAKETAREV VIPQEQNHQP NPILVHQSTF HHQHHQAQPN  240
MNFSSSNTSS NHLHTFPVKK EQQQSNDHMI NYHHQSIPPW LAPHDLTFPN PNPNNGGGGL  300
FSLAAFPAMS ATALLQKAAQ MGSTKTPPLP PTTDFERSAH HNTLTTTMAA MMTSPSGFIS  360
SNNNNQVFLQ GYHGGEQAFD HTFSALLRTN KRGGGGGVGE GLTRDFLGLR PLMSHNEILS  420
IAGLGNCITG PAPDQLRPKP WKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-31147208364Zinc finger protein JACKDAW
5b3h_F5e-31147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRSNKEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180571e-112flower| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123653001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684803.10.0protein indeterminate-domain 11-like
RefseqXP_022555231.10.0protein indeterminate-domain 11-like
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3BB630.0A0A0D3BB63_BRAOL; Uncharacterized protein
STRINGBo3g065750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]