PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123547001 | ||||||||
Common Name | GSBRNA2T00123547001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 33315.9 Da PI: 10.3787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.4e-14 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky GSBRNA2T00123547001 49 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 93 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 43 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.6 | 44 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-7 | 46 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-18 | 47 | 96 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-11 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-12 | 49 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-9 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MNARPAPFLD PVSVSFNSTT PVTGRRDTAS LREDTTTKIR KPYTIKKSRE NWTEQEHDKF 60 LEALHLFDRD WKKIEAFVGS KTVVQIRSHA QKYFLKVQKS GANEHLPPPR PKRKARHPYP 120 QKAPKNVSLP SHAIGSIPAS NAPLLQPAYL FSSSDSQSLL GNPASSSSSL NHESTNLPIP 180 AIQEEPGVSA TALPKNRCYS TSNKEVKPNL PAVTTDPNNE ESCEKTRRVM PNFAQVYRFI 240 GSVFDPNTSG HLQRLKQMDP INMETVLLLM RNLSVNLTSP EFAEQRKLIS AYSSKALK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.18319 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00423 | DAP | Transfer from AT4G01280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123547001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493668 | 5e-91 | AB493668.1 Arabidopsis thaliana At4g01280 mRNA for hypothetical protein, partial cds, clone: RAAt4g01280. | |||
GenBank | AJ937212 | 5e-91 | AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene). | |||
GenBank | AY519513 | 5e-91 | AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds. | |||
GenBank | BT024711 | 5e-91 | BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608711.1 | 0.0 | PREDICTED: protein REVEILLE 5 | ||||
Swissprot | C0SVG5 | 1e-149 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A0D3DZQ1 | 0.0 | A0A0D3DZQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g003580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 1e-125 | MYB_related family protein |
Publications ? help Back to Top | |||
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