PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123464001
Common NameGSBRNA2T00123464001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 604aa    MW: 69123.4 Da    PI: 6.984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123464001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.99.8e-20101359128
                  NAM   9 PtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya...tgkrknr.atksgyWkatgkdke 91 
                          Pt+ +l+ + L++++e++k +   +i+++ d+y+ ePw  +  ++v+ +e+ w++F++r++++     +kr++r ++ksg+Wk+tg  + 
  GSBRNA2T00123464001  10 PTNIDLI-NILRQRIEKNKRPS--FITDMhDLYEKEPWLVQhvRHVSFDENLWFYFVTRKRSAIkktDSKRPSRkVAKSGRWKTTGLLNY 96 
                          9999999.789****9999777..677777**********843366669999*9999999876622145688887789************ PP

                  NAM  92 vlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          +++k+g  vg  kt+ +   ++++++g+ t Wvmhe+ l
  GSBRNA2T00123464001  97 IKNKDGVRVGSLKTISYKanSETEKDGVTTGWVMHEFVL 135
                          *****************9544578899**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3581151IPR003441NAC domain
PfamPF023652.3E-910135IPR003441NAC domain
SuperFamilySSF1019411.24E-2110151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MTRGSQIQGP TNIDLINILR QRIEKNKRPS FITDMHDLYE KEPWLVQHVR HVSFDENLWF  60
YFVTRKRSAI KKTDSKRPSR KVAKSGRWKT TGLLNYIKNK DGVRVGSLKT ISYKANSETE  120
KDGVTTGWVM HEFVLDKPGF QELALCRIRF RKRKDNAQYA PRLTPIVIRL GRELDGSKLV  180
ENNSQNHMTG VHHGVAAPVE THEAQGMEQW IGSCSGEAVS NLALQHQNIM GHDLNYPIFN  240
GGMKKYQDFR SYGQQKNPIL GHMKLYGQGS GDRVEYQNQY LGQETMDPNK VPMMENRTLN  300
EKQRWNEYCG HLPSQHQHFS FNGIQKQHQS LSSCGGFLGE SSGQKQHHIR GRQATYLSLM  360
EVQTQPCHNY FWGKETGTSH SAQAMEEKQQ WNEYSGLYSA QPYVQRMLDH KIFGSSALSI  420
AQNDQYMRQN NDVLAVQQKH LSNLPLTQQQ NKILGHATHN VPCSAQPYDQ YKGQTNELPT  480
VPMETQQQQN NEIPTVPMET HQQQQNNELP KVPVKTQQQE DNIVRNSAGQ LHLEAQDDVP  540
LIDQTMEEQA TDPPTGNELF QDFLGDDTFQ EMDPEMANLP DDFCVADLAQ EFEKIPIPYS  600
LLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123464001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N6PKP10.0A0A3N6PKP1_BRACR; Uncharacterized protein
STRINGBra036314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-12NAC domain containing protein 35
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]