PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123300001
Common NameGSBRNA2T00123300001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 161aa    MW: 18471.7 Da    PI: 5.0269
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind42.81.4e-1341112271
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST..T--HHHHHHHHHHTTEEE---SSBT CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk..hsnfaSFvRQLnmYgFkkvkdeekk 71 
                          F++ +y++++d+++++++sws++g+sf++++e+ef  +v p+ F    + ++S++   n  g++kv+++ ++
  GSBRNA2T00123300001  41 FVRDVYDMVDDPSTDSVVSWSDSGKSFIIWKESEFLGDVFPRCFScdYKDMTSLTAWFNAMGYSKVEESVHR 112
                          99******************************************733579****************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-637133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-1639124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.27E-1339125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-54164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-1241124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-594106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDRDSNDDGR IPFRSLSCYQ EICRLADKDC HFSSIPRYPL FVRDVYDMVD DPSTDSVVSW  60
SDSGKSFIIW KESEFLGDVF PRCFSCDYKD MTSLTAWFNA MGYSKVEESV HREYTGNYLV  120
RGQPPHPTDT FSRTPGGIMI SPEEAKIMER FFASPKARKQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.64400.0microspore-derived embryo| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123300001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895960.0AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141897.11e-116PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_009141898.11e-116PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4DKG91e-114M4DKG9_BRARP; Uncharacterized protein
STRINGBra016998.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.19e-15heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]