PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123178001 | ||||||||
Common Name | GSBRNA2T00123178001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 29180 Da PI: 7.594 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H GSBRNA2T00123178001 96 FECHYCFRNFPTSQALGGHQNAH 118 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.59E-5 | 92 | 124 | No hit | No description |
Pfam | PF13912 | 2.0E-5 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.99 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDETNGQRET HDFMNVNVES FSQLPFIRRT PPKERSSIIR LFGQELVGDN SSDAQQEDFY 60 VDSSETTTTK INEESSENVK DKDKDKEKDN SNNRRFECHY CFRNFPTSQA LGGHQNAHKR 120 ERQHAKRGSM PSYLHHADHH HVYGFLNNHH HRHYPTWTTE ARFYGGGVGG NQTPSYYSRT 180 LLPPPSSSNP PMINGSPLGL WRVPPPSTSA NAIHGVYSAS PAFQTHEQER KESKWPYRLM 240 KPNVQDHVSL DLHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13545 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing cauline leaves. {ECO:0000269|PubMed:17507408}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123178001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. {ECO:0000269|PubMed:17507408}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142029.1 | 0.0 | PREDICTED: zinc finger protein 8-like isoform X4 | ||||
Refseq | XP_013744972.1 | 0.0 | zinc finger protein 8-like | ||||
Swissprot | P93751 | 1e-123 | ZFP8_ARATH; Zinc finger protein 8 | ||||
TrEMBL | A0A397ZXE0 | 0.0 | A0A397ZXE0_BRACM; Uncharacterized protein | ||||
STRING | Bra016900.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2495 | 19 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 1e-102 | zinc finger protein 8 |
Publications ? help Back to Top | |||
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