PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123083001
Common NameGSBRNA2T00123083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 296aa    MW: 33158.9 Da    PI: 4.8145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.5e-168821897
                         --HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 18 lpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW++Fv++n+L++gD+++F +dg+++f  +v ++
  GSBRNA2T00123083001  8 VPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--VKRRDEVYFGQGWSKFVEDNRLRDGDVLTFVYDGSRSF--TVDIY 82
                         566666666555..67889999966669******..9999*****************************98888..77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.704185IPR003340B3 DNA binding domain
SMARTSM010193.9E-12285IPR003340B3 DNA binding domain
CDDcd100175.01E-14782No hitNo description
SuperFamilySSF1019366.87E-18783IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-16783IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-12882IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVCVVQVVPA SYYDELPLVL PKTALLQGSD GGCFWKVAMV KRRDEVYFGQ GWSKFVEDNR  60
LRDGDVLTFV YDGSRSFTVD IYGGSRACKE VRAVAQVISV DDDDDDYDKE DTNTSSEPEM  120
AQTVPNAGNQ EDSNIIEPEV AQRVPRTRNK GKKGVVVQDS DDSFMSEDSN SLSDDSSYSP  180
LNEDTLLDVT PKVTNSRKKG KLRSVSSNVG STSNSSRSVD YCLKFQDYVY YIDNHERGML  240
EARVATWHDY RVSIKKWERI CQRNGLTKGD SLLCELFRKE GLVYAVKIHV VTTTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123083001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669779.10.0B3 domain-containing protein At4g34400-like isoform X1
RefseqXP_022550266.10.0B3 domain-containing protein At4g34400-like isoform X1
TrEMBLA0A3P6FVW41e-169A0A3P6FVW4_BRAOL; Uncharacterized protein
STRINGBo1g016660.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.18e-30B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]