PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122795001
Common NameGSBRNA2T00122795001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 441aa    MW: 48229.5 Da    PI: 10.2085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122795001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067203225223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C++Cgk Fs  +  + H  + H
  GSBRNA2T00122795001 203 SCHKCGKQFSKLEAAEAHHLSkH 225
                          6************9999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
SuperFamilySSF563991.82E-22227439No hitNo description
Gene3DG3DSA:3.90.228.101.6E-11233437IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDDSNTRSQT KKTKKLQKDK NKKKNIPTVW FSLKKSLHCK SEPSDVHVPK STKHLTTIST  60
KRISTVNSSL PSAGCGGGLS GCSRSIANLK DVIHGSKRHF EKPPISSPRS IGSNEFLNPI  120
THEVILSNST CELKITGVGD MASPAGATES GGSGVGNGRS TTFVGMLRPG TPMHHLNRFH  180
TKRRVSLEMN RDSAVNGGKY SVSCHKCGKQ FSKLEAAEAH HLSKHAVTEL VEGDSSRKIV  240
EIICRTSWLK SENQCGRIDR VLKVHNMQKT LARFEEYRET VKIRASKLQK KHPRCLADGN  300
ELLRFHGTTV ACGLGINGST SLCTAEKCCV CRIIRNGFSA KREKNNGVGV FTASTSGRAF  360
ESILVEEDDG ERTVRKVLIV CRVIAGRVHR PVENVEEMNG LMMSGFDSLA GKVGLYTNVE  420
ELYLLNPRAL LPCFVVICKS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239760.0vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122795001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891880.0AC189188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001N22, complete sequence.
GenBankAC1894480.0AC189448.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071K22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675666.10.0uncharacterized protein LOC106380454
TrEMBLA0A3P6DDZ90.0A0A3P6DDZ9_BRAOL; Uncharacterized protein
STRINGBo2g041600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]