PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122628001
Common NameGSBRNA2T00122628001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 411aa    MW: 44212.9 Da    PI: 6.3264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122628001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016111131323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  C+k F++   L  H+r H
  GSBRNA2T00122628001 111 CCVCHKKFPSMKALYGHMRFH 131
                          9******************99 PP
2zf-C2H211.20.0011268290123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+ksF++   L  H  +H
  GSBRNA2T00122628001 268 HVCVTCNKSFTSYQALGGHRASH 290
                          79**********99999998887 PP
3zf-C2H213.80.00018335357123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+ksF++   L  H r+H
  GSBRNA2T00122628001 335 HVCNKCHKSFPTGQALGGHKRRH 357
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-45783IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-759131No hitNo description
PROSITE profilePS5015710.3256188IPR007087Zinc finger, C2H2
SMARTSM0035516183IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-76184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559109131IPR007087Zinc finger, C2H2
SMARTSM003551.4109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
PfamPF139125.3E-4111132IPR007087Zinc finger, C2H2
SuperFamilySSF576674.89E-6267290No hitNo description
SMARTSM003550.37268290IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-10268292IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452268295IPR007087Zinc finger, C2H2
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
SuperFamilySSF576674.89E-6330357No hitNo description
SMARTSM003550.1335357IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39335357IPR007087Zinc finger, C2H2
PfamPF139129.1E-12335358IPR007087Zinc finger, C2H2
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDQLSGNKSN CGFSPGSPRF GSTQEEQAED VEKQAKSIDL REEDDDDDDG ATSADLEEKK  60
HICCACGKSF TSGKALGGHK RLHMLQTRKI STVRPKMVSA GDERGELEVD CCVCHKKFPS  120
MKALYGHMRF HPDRGWKGVL PPHHPLGNLS SSTISTGDDD DDDDDDDHWE LGNVVDLKES  180
VKGSWTTGKR ARRSALKIDE SDIDARNLLF LATTAEAVDL DVAGTSDSHS GEEMMTKKKK  240
KRLSHDHHQL EVVVGGADEE GAGAHEKHVC VTCNKSFTSY QALGGHRASH NKVKVLENHH  300
ARANGEALLL GTEAMIAGLG SAQGPNTSIS SNGDHVCNKC HKSFPTGQAL GGHKRRHWTG  360
PVSSEAATAV PSAATAPGGA SSSQVTETVQ EVKKKKLLEF DLNELPPNEE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122628001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893780.0AC189378.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619057.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A3P6D0Q20.0A0A3P6D0Q2_BRAOL; Uncharacterized protein
STRINGBra035609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]