PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122216001
Common NameGSBRNA2T00122216001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 257aa    MW: 29062.4 Da    PI: 7.5693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122216001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20181215135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  GSBRNA2T00122216001 181 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 215
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16174237No hitNo description
SMARTSM004013.0E-20175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084179211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15179212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.80E-17180229No hitNo description
PfamPF003202.0E-18181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNWLPEEEFN DSFFDDLINH INFPLEDTTT NGGEGEDWES KFQHLEPPPM DLFTTFPSEF  60
TSSYGINKEV AHVPVLKQSS SSSPPDVKVS KLFQSSSPVS VLESSDGSFS PQNLISQSLA  120
FPVKGMRSKR KRPTAQRFRC LYPFEANKLE SYYSSEQHAK KKRKTSHTEA SSYDDGIVRR  180
CTHCETTKTP QWREGPNGPK TLCNACGVRF RSGRLVPEYR PASSPTFIPS LHSNSHRKII  240
EMRRKEGDEF DNLTTA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122216001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118398.10.0PREDICTED: GATA transcription factor 11-like
RefseqXP_013716496.10.0GATA transcription factor 11-like
RefseqXP_018510592.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-112GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A397YAI40.0A0A397YAI4_BRACM; Uncharacterized protein
STRINGBra031608.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-95GATA transcription factor 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]