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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00122195001 |
| Common Name | GSBRNA2T00122195001, LOC106419976 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
Dof |
| Protein Properties |
Length: 315aa MW: 34409.8 Da PI: 9.3978 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00122195001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 97.8 | 7.3e-31 | 76 | 134 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e alkcprC+s ntkfCy nny+ +qPr++CkaCrryWt+GG lr+vP Gg rr+n k+
GSBRNA2T00122195001 76 EGALKCPRCNSINTKFCYNNNYNPTQPRHYCKACRRYWTHGGKLRDVPEGGRRRRNSKK 134
6689**************************************************99876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MVFSSNWSQP TNPNQLQLNE NGSLVNGHGL LSHQLPPFPQ NPNPNHHHAA ASSGLPARLV 60
GFMAERANQT KAPRPEGALK CPRCNSINTK FCYNNNYNPT QPRHYCKACR RYWTHGGKLR 120
DVPEGGRRRR NSKKNKNGNA KSSSTVNAPS SSSGQLRTNH QFPFLPTLQN LTQLGGIGLN 180
LAAANGNNQA HHIGPSLMND LGFLHVGNER NSHDNNNSEN NLMGPGGFPL FDPTSGPYGF 240
QNEGNIENDV GLSFPSTSMV DSSIYQTGPV KMEEQPNLVN LSRPVSGLTH PVNQTNQYYW 300
NNSDFSGPSS NDHH*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In roots, confined to the central cylinder (vascular tissue and pericycle) of both main and lateral roots. In leaves, expressed in the vasculature, mostly in phloem cells. Also present in the vasculature of stems and in stamen filaments of flowers. Detected at low levels in the vasculature of petals and carpels. {ECO:0000269|PubMed:16740150}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature (mainly in the phloem and associated cell files) of cotyledons, leaves, roots, flower stalks and petals (PubMed:10758484, PubMed:16740150, PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) form a short-range concentration gradient that peaks at protophloem sieve elements (PSE) (PubMed:30626969). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ584284 | 0.0 | FJ584284.1 Brassica rapa subsp. pekinensis OBF binding protein 2 Dof1.1-1 gene, complete cds. |
