PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122184001
Common NameGSBRNA2T00122184001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 633aa    MW: 72698.8 Da    PI: 5.3784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122184001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.2e-1062536292373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ +ssgd+     lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++k+f  +sP+
  GSBRNA2T00122184001 253 RTLLILCAQSISSGDMITSVDLLRQIRNQSSPLGDASQRLAHFFANALEARLQGSSGGVIQSYyDAVTSKKRTAAQILKSYKTFLSASPF 342
                          689***************************************************8887777775788888888***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ +l  N++Il+ ++ ++ +H+iDf+i +G+QWp ++q +++ ++gp +lRiTgv+ p++g   +e+le tg+rL+++++++gvpfe+
  GSBRNA2T00122184001 343 MTLMYLYSNKMILDVAKDASVLHVIDFGILYGFQWPMFIQRISESKNGPRKLRITGVELPQNGfrPTEKLEDTGRRLREYCKRFGVPFEY 432
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++++k++e+++lee++++p+E+laVn vl+ ++l d +   e+ +r+ +Lkl+++++P+vv  +  + + n++ F +rf eal +y+a+
  GSBRNA2T00122184001 433 NAIASKNWETIRLEEFKIRPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVVLNSTVNGSFNASFFTTRFKEALFHYTAV 522
                          ***99*******************************9999999889******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd++ ++l+re+ er+  E+++ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++++ +++ +  +++ +  + + ++e+s+
  GSBRNA2T00122184001 523 FDMFGSTLSRENPERMHFEEVFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVETELVESFREKMKRWGyHKDFVLDEDSN 612
                          ****************************************************************************999999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          ++++gWk+r L+s S+W
  GSBRNA2T00122184001 613 WFLQGWKGRILYSSSCW 629
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.941226609IPR005202Transcription factor GRAS
PfamPF035147.5E-104253629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MMESNLYGMV NGYEYYDVSY LPNQTPNLGF GVPSSSDFDL RLDRIQIQPS IWVPSTQQHQ  60
DQDSPPGADE IDSENTLLKY VNQLLMEEET LAENQTLSYD SLALRQTEEM LQQVITDSQT  120
QSPYISTSSS NSSGSGGEYL NSYSDSYSVN QFKRGVEEAS KFLPNTDQWI FNQDEKVYTS  180
RVRKHHHQRG EEEEHEEARM SKQSASNVDD GKLTEMFDKV LLLDNQLDPQ INDNVSSKAP  240
ASKKERVQAV DFRTLLILCA QSISSGDMIT SVDLLRQIRN QSSPLGDASQ RLAHFFANAL  300
EARLQGSSGG VIQSYYDAVT SKKRTAAQIL KSYKTFLSAS PFMTLMYLYS NKMILDVAKD  360
ASVLHVIDFG ILYGFQWPMF IQRISESKNG PRKLRITGVE LPQNGFRPTE KLEDTGRRLR  420
EYCKRFGVPF EYNAIASKNW ETIRLEEFKI RPNEVLAVNA VLRFKNLRDV TPGEEDCPRE  480
GFLKLIRDMK PDVVLNSTVN GSFNASFFTT RFKEALFHYT AVFDMFGSTL SRENPERMHF  540
EEVFYGREVM NVIACEGVDR VERPETYKQW QVRMMRAGFK QKPVETELVE SFREKMKRWG  600
YHKDFVLDED SNWFLQGWKG RILYSSSCWV LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-472566298374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122184001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716275.10.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A397Y7V70.0A0A397Y7V7_BRACM; Uncharacterized protein
STRINGBra031581.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]