PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00122144001

Common Name

GSBRNA2T00122144001, LOC106419809

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 326aa MW: 36002.9 Da PI: 6.0011

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00122144001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.7e-10	133	182	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + GSBRNA2T00122144001 133 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 182 9****************************************998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.1E-16	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	131	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.6E-8	133	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-10	133	184	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.5E-10	133	188	No hit	No description
CDD	cd14703	6.30E-22	134	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEKPDPQPPN AADPIPSSFH RRSRSDDMSM FMFMDPLSSS GPPPSSDDLP SDDDLFSSFI 60 DVDSLSSNPH PTTIAFPNHH AAANSVPSSS SRPRHRHSNS VDAGCAMYAN EIMDAKKAMP 120 PEKLSELWNV DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQSLQTEA TTLSAQLTLF 180 QRDTNGLANE NTELKLRLQA MEQQAHLRNA LNEALRKELE RMKIETGEIS GNSDSFDMGM 240 QQVQYSPSTY MAIPPYHHGA INNGQDMQQM HGYNPMEAMS NSQSVSEFLQ NGRLQGLEIS 300 SNNNSSSLVK SEGPSLSASE SSSAY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00122144001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011001	3e-43	AC011001.2 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete sequence.
GenBank	AJ419852	3e-43	AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AJ419853	3e-43	AJ419853.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AY062474	3e-43	AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBank	BT000102	3e-43	BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
GenBank	CP002684	3e-43	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716099.1	0.0	transcription factor RF2b
Swissprot	O22873	2e-83	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A3P5Y9R3	0.0	A0A3P5Y9R3_BRACM; Uncharacterized protein
TrEMBL	M4ERW4	0.0	M4ERW4_BRARP; Uncharacterized protein
STRING	Bra031541.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13555	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	1e-121	basic leucine-zipper 52

Link Out ? help Back to Top
Entrez Gene	106419809

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]