PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00121806001 | ||||||||
Common Name | GSBRNA2T00121806001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 239aa MW: 26132.1 Da PI: 10.0646 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 32.8 | 1.2e-10 | 191 | 223 | 86 | 118 |
CG-1 86 ahseenptfqrrcywlLeeelekivlvhylevk 118 ah+e+n++f+r cyw+Le+el +iv+v+ylevk GSBRNA2T00121806001 191 AHGEDNENFERLCYWMLEQELMHIVFVQYLEVK 223 8*****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03859 | 1.1E-6 | 190 | 222 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSFTGKSNSE KPQRVEGDSF PGPINPIGDP HSKQAKVEAS FSSGLTKLKA DTFPGPIKPI 60 GDPHSKQAKA VASISSGLTK LKDDSFPGPI KPIGTPDSKN CKGTINHNTK TGFSSGVRGK 120 AAVSSAVKGK AIVSAKVMAF KDVKYGLHDG ELRFRLIHFW EARNVVTKVL LGGSSDILGK 180 MGTTGGRRKM AHGEDNENFE RLCYWMLEQE LMHIVFVQYL EVKVKQFKFC EWLHFCEY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00121806001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018509140.1 | 1e-114 | PREDICTED: uncharacterized protein LOC103835324 | ||||
TrEMBL | A0A3P5Y9W6 | 1e-176 | A0A3P5Y9W6_BRACM; Uncharacterized protein | ||||
STRING | Bra010875.1-P | 1e-163 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 3e-15 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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