PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121520001
Common NameGSBRNA2T00121520001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 326aa    MW: 37031.8 Da    PI: 7.3686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121520001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31191245256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          +r+rW++eLH++Fv+a+++LGGs++AtPk+i+++mkv+gLt+++vkSHLQkYR++
  GSBRNA2T00121520001 191 QRRRWSQELHRKFVDALHSLGGSQVATPKQIRDMMKVDGLTNDEVKSHLQKYRMH 245
                          8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-27187248IPR009057Homeodomain-like
PROSITE profilePS5129412.256187247IPR017930Myb domain
SuperFamilySSF466893.18E-17188248IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24191245IPR006447Myb domain, plants
PfamPF002499.7E-8192243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVQTDSDKMG LNLNLSMYSL AKPLSQFLDE VSRIKDYDSK LSEIDGYVGK LEEERRKIDV  60
FKRELPLCML LLNEAIETLK EEASSSVMMA SDGKLDVGEG AKVESDNKKN WMSSAQLWIS  120
NPNSQLQSTN EKEDRSVTHR PNQRGAFTPF NLPPPPPPPL TLRTPPSEIL MDYNHQFNKP  180
MQSLHSQKKE QRRRWSQELH RKFVDALHSL GGSQVATPKQ IRDMMKVDGL TNDEVKSHLQ  240
KYRMHIRKHP LHPAKTLSSS DQPVLLDKET QSLISLTRSD SPQSPLVDGC LFNNNGHSSE  300
DEEKSDGRSW KSESNKKRQA LDLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14192243455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.93251e-144seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121520001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738390.0DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733371.10.0transcription factor HHO5-like
SwissprotF4JRB01e-151HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A0D3A1F20.0A0A0D3A1F2_BRAOL; Uncharacterized protein
STRINGBo1g005280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-150G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]