PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121233001
Common NameGSBRNA2T00121233001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 29009.2 Da    PI: 10.1024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121233001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
  GSBRNA2T00121233001 19 RGHWRPIEDDHLRQLVEQYGPKNWNFIAQHLC-GRSGKSCRLRWYNQ 64
                         899*****************************.************96 PP
2Myb_DNA-binding551.9e-1771114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
  GSBRNA2T00121233001  71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                          689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1141465IPR017930Myb domain
SuperFamilySSF466891.65E-2818112IPR009057Homeodomain-like
SMARTSM007172.1E-141867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-252072IPR009057Homeodomain-like
CDDcd001678.25E-132263No hitNo description
PfamPF139211.9E-162282No hitNo description
PROSITE profilePS5129423.19866120IPR017930Myb domain
SMARTSM007171.5E-1470118IPR001005SANT/Myb domain
CDDcd001671.05E-1073113No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDMSRGSNSF DNKKISCQRG HWRPIEDDHL RQLVEQYGPK NWNFIAQHLC GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RESLSSTSTS TFNQSWHNIL SPSSSLTRLN RSSQFGLWRY QKDTSRGHWP YTFVSAPRDD  180
QFGSSSISNV RKEVYPERRK LKELVDEHNN AFHTATPDQN KNSVEDGPST GDDGGEKNVT  240
FIDFLGVGLV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33191197107B-MYB
1gv2_A3e-33191194104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-321911958158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-321911958158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-33191194104C-Myb DNA-Binding Domain
1msf_C3e-33191194104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121233001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896370.0AC189637.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735180.10.0transcriptional activator Myb-like
TrEMBLA0A398AID40.0A0A398AID4_BRACM; Uncharacterized protein
STRINGBra011441.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-155myb domain protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]