PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00121042001 | ||||||||
Common Name | GSBRNA2T00121042001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 31865.8 Da PI: 8.5795 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.8e-30 | 149 | 207 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh GSBRNA2T00121042001 149 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 207 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-28 | 144 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 145 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-34 | 149 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 150 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.97 | 151 | 210 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDCPSFLDIS LNLNTNNLDR SFPEKLPKKE LKVSTSADLK RKWMVKDESA SELREELNRV 60 NSENKKLTEM LATVYEKYYA LQHHLEKLQS RRQSPETDQF EQPTKRRKQD SDESLSLPNG 120 FSTVTDSFDK AKISTVYVSA VCSDTSLTVK DGYQWRKYGQ KVTRDNPSPR AYFRCSFAPS 180 CPVKKKVQRS AEDPSILVAT YEGTHNHLGP NASEGDATSQ VGSRTVTLEM VHGGHSLALE 240 KNERETMQEV LVQQMASSLT KDSKFTAALA AAISGRLMEQ SRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 151 | 207 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 151 | 207 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28164 | 1e-113 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00121042001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430037 | 0.0 | KF430037.1 Brassica rapa WRKY transcription factor 18 (WRKY18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013668253.1 | 0.0 | WRKY transcription factor 18-like | ||||
Swissprot | Q9C5T4 | 1e-151 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A3P5Z238 | 0.0 | A0A3P5Z238_BRACM; Uncharacterized protein | ||||
STRING | Bra011299.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-153 | WRKY DNA-binding protein 18 |