PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120755001
Common NameGSBRNA2T00120755001, LOC106357956
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 496aa    MW: 53424 Da    PI: 7.4997
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120755001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.9e-1577115241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  GSBRNA2T00120755001  77 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCFNNVD 115
                          689*************************.********986 PP
2TCR51.32.3e-16161200140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  GSBRNA2T00120755001 161 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 200
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-1676116IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.6177201IPR005172CRC domain
PfamPF036388.4E-1178113IPR005172CRC domain
SMARTSM011147.8E-20161202IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-13164199IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGEGDEFPPK TEEFDAPTKK TARQLDFAGG HSQANQAPAT VAVPIPPLQS QLPIRLPKPE  60
SPKPKPRPVV EATTPLKKKH CNCKHSRCLK LYCECFASGT YCDGCNCLNC FNNVDNEPAR  120
REAIESTLER NPNAFRPKIA SSPHDPRDNR EVVGGVVMLG KHHKGCHCKK SGCLKKYCEC  180
FQANILCSDN CRCLGCKNFE GSEDRLALFH GEHSHGAAYL QHANAAITGA VGSSGFASSP  240
APKRRKAQDI FFNQAAKDSS INRLGQVSSG KTTSSKPVSR HGGPSKVVYR SLLADIIQPQ  300
DVKALCSVLV AVSEEAAKTS TEKRLENQTE TSLASSAQDN NNGTEVEKAV SGNEAGADES  360
NSDGSKGKSL SPETLALMCD EQDTMLMVAA SSNCSVEPPN GQDQGYAEQE KIVLTKFRDC  420
LNRIISYAEL KESKCSLSRM DTESPVHAAV KVEQVVQQGA VTNGVPQTTI QEPSQLTSSY  480
TQTQQPQAPS EKKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-307821011132Protein lin-54 homolog
5fd3_B3e-307821011132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120755001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561142.10.0protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A0D3D2D50.0A0A0D3D2D5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EUY90.0A0A3P6EUY9_BRAOL; Uncharacterized protein
STRINGBo7g003920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]