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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00120626001 | ||||||||
Common Name | GSBRNA2T00120626001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 447aa MW: 51375.4 Da PI: 6.7146 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.7 | 7.2e-20 | 185 | 237 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++W +eL ++F++a+e L G+e A+Pk+ile m+v g+t+e+v+SHLQk+R+ GSBRNA2T00120626001 185 KRRVVWDNELKKKFLDAMEDL-GPE-AVPKKILERMNVVGMTRENVASHLQKHRM 237 689******************.887.****************************7 PP | |||||||
2 | Response_reg | 41.7 | 6.3e-15 | 24 | 119 | 13 | 108 |
HHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEES CS Response_reg 13 llrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsK 100 l++ l++ +y +v+ +++g a++ll+++ +D+ ++ + +++d ++l++ei++e +lpii+ + ++ + +++ +k G+ d+l K GSBRNA2T00120626001 24 SLEKHLQDFQY-KVTICQEGAGAMHLLRNHMnkFDIAIIEAQNSTVDIFRLISEIASEI-DLPIIITSKDDSVQSVINWMKIGVCDYLIK 111 5778899999*.***************888778**********************9988.9***************************** PP S--HHHHH CS Response_reg 101 pfdpeelv 108 p+ pe+l+ GSBRNA2T00120626001 112 PIRPEDLR 119 *****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.38E-18 | 8 | 133 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-19 | 9 | 146 | No hit | No description |
SMART | SM00448 | 0.0082 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 24.929 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.9E-9 | 23 | 119 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.99E-8 | 25 | 119 | No hit | No description |
SuperFamily | SSF46689 | 8.6E-13 | 182 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 183 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-19 | 185 | 237 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MFTCNFPEGL RVLVFVENLQ TLLSLEKHLQ DFQYKVTICQ EGAGAMHLLR NHMNKFDIAI 60 IEAQNSTVDI FRLISEIASE IDLPIIITSK DDSVQSVINW MKIGVCDYLI KPIRPEDLRF 120 IFKHVVKKMQ VGKRVESEEK ATAEKSSSVG DSTIRNPNKR KRSMFIDGQV GEKDQDHVRD 180 STTKKRRVVW DNELKKKFLD AMEDLGPEAV PKKILERMNV VGMTRENVAS HLQKHRMLLN 240 KQKSQNEKDE KKRFLLSPQG GLHSGEGSSK FYRGSNIQFS TQHISNIPHQ PLRHHHDGVP 300 VAVSTRNLLM TNQHHHQISD FTCIENVEES LIYTEEDGEV SNLASFFTQK SEEMSLSHLH 360 EPVMATTMLS NDNQLFPNQQ QMMNFHEPSI LHTHSFPLSL TPSSFLDQKE TIMMMNVDEG 420 LQQWFLNEQE QPNLTDENRF SSINPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-13 | 181 | 241 | 1 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00120626001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129772.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR4 | ||||
Swissprot | Q9FJ16 | 1e-92 | APRR4_ARATH; Putative two-component response regulator-like APRR4 | ||||
TrEMBL | A0A3P6D6I5 | 0.0 | A0A3P6D6I5_BRAOL; Uncharacterized protein | ||||
STRING | Bra020652.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13222 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49240.1 | 4e-88 | pseudo-response regulator 4 |
Publications ? help Back to Top | |||
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