PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120564001
Common NameGSBRNA2T00120564001, LOC106382495
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 338aa    MW: 37448.6 Da    PI: 10.1159
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120564001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31270327359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  GSBRNA2T00120564001 270 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCVDETSMLIVTYEGEHNHS 327
                          9*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.8E-15229266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-33256327IPR003657WRKY domain
PROSITE profilePS5081129.241263329IPR003657WRKY domain
SuperFamilySSF1182901.7E-26266327IPR003657WRKY domain
SMARTSM007743.5E-37268328IPR003657WRKY domain
PfamPF031061.7E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDPK SIMFETREAV SKFRSVSSLL SSGSGQRKIK  60
KHNNNYYKLR SLQLPQQIFL ESPVFSNNAI TGCIPILAPK PLRIIPPAAP SYSEQRQGHP  120
PPMMLNQKMC VDKSFLELKP PSSHQNPYQF IPNHQQGVYS RSNSGLNLKF DGPCGGSCYS  180
PSVSNGSRSF VSSLSMDTSV ADYNRNSFHL IGLPQGSDHI SQHSRRTSCS GSLKCGGRSK  240
CHCSKKRKLR VRRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSLRGC  300
PARKHVERCV DETSMLIVTY EGEHNHSRIL SSQSAQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20256327272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.84990.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120564001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931680.0KM593168.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY146) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677976.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A3P6DHE00.0A0A3P6DHE0_BRAOL; Uncharacterized protein
STRINGBo2g151880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-169WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]