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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00119572001 |
| Common Name | GSBRNA2T00119572001, LOC106423964 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
Dof |
| Protein Properties |
Length: 407aa MW: 42809.9 Da PI: 9.3388 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00119572001 | genome | Genoscope | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 121.3 | 3.5e-38 | 92 | 151 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
e+alkcprCdstntkfCy+nny+l+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++
GSBRNA2T00119572001 92 ETALKCPRCDSTNTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 151
6789*****************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MVFSSFPTYP DSSNWQQQHQ PITTTVGFTG NNNISQQFLP HHPLPPQPQQ TPPPLQHNGN 60
GGGGGGPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC DSTNTKFCYF NNYNLTQPRH 120
FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSGGGGASS SSGNSKSQDS TTSNDQYHHR 180
AMANNQMGPP TSTSLSSLLS SYNAGLIPGH DHNNNNNNIL GLGSSLSPLK LMHPSDFTDN 240
FTLQYGAVSA PSYHTGGGSS GGSGGGGASA ILTGLDQWRF PATHHQLPLL GGLDNSSSSG 300
LYPFDHQNPG YGLVTGSGQY RPKNIFHNLV SSSSSASSAM VPATASQLAS VKMEDSNNQL 360
NMSRQLFGNE QELWNIHGSA ASTAAASTNS WSDVSNNFSS SSTSNI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specific to both elongating procambial cells and to cells isodiametric in size that are presumably destined to develop into higher-order veins. Strongly expressed in advance of perceptible procambium formation. Expressed in the cells of prospective veins in leaf primordia of seedlings and cotyledons of developing embryos, and the vascular tissue of developing flower buds. {ECO:0000269|PubMed:17583520}. |
| Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously, especially in the vascular tissues, except in seeds, petals and anthers (PubMed:20807212). Specific to the vascular tissues in young leaves, cotyledons and flower buds (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) form a short-range concentration gradient that peaks at protophloem sieve elements (PSE) (PubMed:30626969). {ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189646 | 0.0 | AC189646.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence. |
